Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00211 ATGGAGGATTCCGGGACCGGGATTCGAGCTTCTTCCGGTAAGATATCGGCTAAAGTCGTCGCTATTGCTGCTGGTGAAGCTCACACTCTCGCTCTTACTGGAGATGGGAGAGTGTATTCATGGGGAAGAGGAATGTTTGGGCGGCTTGGGACGGGGACGGAAGCGGACGAACTTTTACCTGTACGAGTTAAGCTTGGTTCTGAGGAAGCGAATCTCGAAGTTGTGGCGATTGCTGCTGGTTCTTATCATAGCCTCGCTCTTGCTGATGATGGTTCAGTTTGGAGCTGGGGTTACAACATCTATGGCCAACTTGGATTTGATGGAGGAAATTCCGCTACCCCGTGCTTGCTGAAGCAGTTTCTTGAGTTGGAATCTCCAGATTCTTCGACAGACGAGTCAGGCTCGAAGGATAAGGGGTCAAAAACGATTTGTGACGTCAAAGCTGGGGGGTTGGTCTCTCTTGCAATCGACGATCTCGGAGCCCTATGGATGTGGGGTAATTGTCCAAAGCCAAACGGTGAGGACAAAGTTGGCTTATCTTATGTTAGCAGCTTCACTCCCTCTCCAGTGTCGGAGCTCCATGGCCATACTGTTGTTAAGGTTGCTTGTGGTAATGAGCATATCGTGGCCCTGGTTAGCGTTGGGGCAACCTACAATAAAGATGAAGATTTAGTTTGCTACTCATGGGGAAATAATTCTCATGGCCAATTAGGCCTGGGAGATAGAGATGGCAGGGCACGTCCCCAACTTATCGAGACATTTAACGAGGCATCCCCTTGGGCAGTGTATGAGGTAGCGTGCGGGGCATTCCATACCGCTTTACTTAGCCGCAGAAAGGGACCAAGTGACACTTTAGAAAGTGTATGTTGGACATTTGGTATAGGGGAAAATGGGCAGCTTGGACATGGAACTACCCAAAATGAATTGCTTCCTAAGCCTGTAAAAGAATTGCCGCAATCTGTATCTCTGATCTCAGTCGCTTGTGGCCTTTTTCACACGAGCGTTGTTTCATCAGCTGGAGATGTATGGTCCTGGGGAATGGAAAGGGGACTTGGACTTTGCCCTGATGCTAGTTTCACTGGGACCGACACAGGCGATGCGATTTCTCCCCTATCCATCTTATGCAATGGGTCTCAATCTCCAAAATTCTTGGATCCTGTTCAGGTTGCTTGTGGGGCTGCTCACACTATCATTGTTGCACATAATGGATATAAGTTATGGTCATGGGGACGAGGAAGAAGTGGAGTTCTTGGAAATGGTAAGACAGTCGATTGTTATACTCCCACCGTCGTGTCGTGGCCTCCACCGGGCGAGGATTTCACTCAAGAGGAAATAGAAACAAAAAACACGGAAGATAAAGTCAAAGAAGATAGTACCGAGGAAGTAACCGAAGAAAACAAAAAATTGCTTATAGCTATGGAGGAAATCAAAGTTCTGCTAGAGAAACTGTCTGTTATGGAACGGTATGCAAGCTTTCTTCATGGCACCATATTTGGAAAACCGTTCCAAGAAGGAGATATCCCACTCTCATTGCAAAATTCTGGTACGTTCGACATTGCCAAGGAATGGGAAAGCCTTTTCGAGTCGATAGATCGCAAAGATCTACTAAGGATGGAGGCAGTCTACCAACACATGCTGGCAACTATTAAAGACAAGATCATGAAGAAAAGGGTCCAGGAGCTTGTGAACGAGTTTCTCCAATCTTCAACGTCTAAAAATTAG 1722 47.04 MEDSGTGIRASSGKISAKVVAIAAGEAHTLALTGDGRVYSWGRGMFGRLGTGTEADELLPVRVKLGSEEANLEVVAIAAGSYHSLALADDGSVWSWGYNIYGQLGFDGGNSATPCLLKQFLELESPDSSTDESGSKDKGSKTICDVKAGGLVSLAIDDLGALWMWGNCPKPNGEDKVGLSYVSSFTPSPVSELHGHTVVKVACGNEHIVALVSVGATYNKDEDLVCYSWGNNSHGQLGLGDRDGRARPQLIETFNEASPWAVYEVACGAFHTALLSRRKGPSDTLESVCWTFGIGENGQLGHGTTQNELLPKPVKELPQSVSLISVACGLFHTSVVSSAGDVWSWGMERGLGLCPDASFTGTDTGDAISPLSILCNGSQSPKFLDPVQVACGAAHTIIVAHNGYKLWSWGRGRSGVLGNGKTVDCYTPTVVSWPPPGEDFTQEEIETKNTEDKVKEDSTEEVTEENKKLLIAMEEIKVLLEKLSVMERYASFLHGTIFGKPFQEGDIPLSLQNSGTFDIAKEWESLFESIDRKDLLRMEAVYQHMLATIKDKIMKKRVQELVNEFLQSSTSKN 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1352910 1357030 + Cp4.1LG07g02490.1 Cpe07g00211 472018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00211 573 SUPERFAMILY RCC1/BLIP-II 25 434 IPR009091 -
Cpe07g00211 573 PRINTS Chromosome condensation regulator RCC1 signature 37 53 IPR000408 -
Cpe07g00211 573 PRINTS Chromosome condensation regulator RCC1 signature 74 87 IPR000408 -
Cpe07g00211 573 PRINTS Chromosome condensation regulator RCC1 signature 93 109 IPR000408 -
Cpe07g00211 573 PRINTS Chromosome condensation regulator RCC1 signature 160 176 IPR000408 -
Cpe07g00211 573 PRINTS Chromosome condensation regulator RCC1 signature 201 217 IPR000408 -
Cpe07g00211 573 PRINTS Chromosome condensation regulator RCC1 signature 329 347 IPR000408 -
Cpe07g00211 573 PRINTS Chromosome condensation regulator RCC1 signature 399 420 IPR000408 -
Cpe07g00211 573 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 10 571 - -
Cpe07g00211 573 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 265 275 IPR000408 -
Cpe07g00211 573 Pfam Regulator of chromosome condensation (RCC1) repeat 406 435 IPR000408 -
Cpe07g00211 573 Pfam Regulator of chromosome condensation (RCC1) repeat 227 275 IPR000408 -
Cpe07g00211 573 Pfam Regulator of chromosome condensation (RCC1) repeat 290 335 IPR000408 -
Cpe07g00211 573 Pfam Regulator of chromosome condensation (RCC1) repeat 35 87 IPR000408 -
Cpe07g00211 573 Pfam Regulator of chromosome condensation (RCC1) repeat 90 155 IPR000408 -
Cpe07g00211 573 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 340 402 IPR000408 -
Cpe07g00211 573 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 160 214 IPR000408 -
Cpe07g00211 573 MobiDBLite consensus disorder prediction 441 460 - -
Cpe07g00211 573 MobiDBLite consensus disorder prediction 436 460 - -
Cpe07g00211 573 Gene3D - 4 219 IPR009091 -
Cpe07g00211 573 Gene3D - 220 480 IPR009091 -
Cpe07g00211 573 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 36 90 IPR000408 -
Cpe07g00211 573 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 201 211 IPR000408 -
Cpe07g00211 573 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 287 339 IPR000408 -
Cpe07g00211 573 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 91 159 IPR000408 -
Cpe07g00211 573 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 77 87 IPR000408 -
Cpe07g00211 573 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 224 278 IPR000408 -
Cpe07g00211 573 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 10 571 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00211 - - - csv:101217770 998.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00211 Cpe-Chr7:1352910 Cpe19g00104 Cpe-Chr19:824257 5.97E-25 dispersed
Cpe07g00205 Cpe-Chr7:1319496 Cpe07g00211 Cpe-Chr7:1352910 4.57E-06 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g285 . . . . . . . . . Cmo12g00200 . . . Car12g00233 . Cpe07g00211 . . . . . . . . . . . . . . . . . . . . . . Cme03g01749 Blo17g00065 . . Bda13g01328 . . . . . . . . Cma12g00248 . . . . . . . . . . . Cla08g01218 Cam08g1677 Cec08g1255 Cco08g1375 Clacu08g1375 . Cre08g1160 Lsi08g01081 . Chy03g01253 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009895 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00211 Cpe_Chr07 FPKM 50.934471 56.095722 69.141029 67.852882 55.571384 44.066856 59.553913 66.232506 69.89167 63.956661