Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00227 ATGGAGAATTCTTCTCTCGATCAAGAGACCGCCAAGAAAGTGCTTCGTCAGGTCGAGTTCTATTTCAGCGACAGTAATCTTCCTAGAGATGGTTTTCTTAAGAAAACTATTGGCGCAAGCCCCGATGGAAGTATCCTTTACCTTGTGCCATTACGTGTTTATGCGTTTTTTCTTCTTTGGTCTTTTGTTGATCTTAACTGGAAAATTACAGTGGTGGATTTGTCTTTAGTTTGTTCGTTTTCTCGGATGAAAGGCCATCTTCATTTGGCTCAGGACGTGAAACCGGACGCGATTCCAGAAGATACTGTAAAAGCTGTTGCTGAAACTTTGAAAAGCTCTTCAACTATCAAAGTTTCTGAAGATGGGAAGAAGATTGGTAGAATTGCTGAACTCTCAAAGCCTGAGGAGATGATAGAGCAATTGGATGATAGAACCATTGCTGCATCGCCGTTTCAATATGATGTCAAGCTCGAAGATGTAGAAGCATTTTTTGGTCAAATCGCGAAGGTCAACAGTGTGAGGTTGCCCCGCCATGTTTCGGATAAACGTGTATTCTGTGGAACTGCCTTGGTAGAGTTTTCTGCTGAAGAAGATGCAGAAAAAGTTTTGGCGGAAAGCTTGCTTTATGCTGGTGCCAAGTTAGAATTAAAACCAAAGAGGGATTTTGATGAGGAGAGATCAAAAGAGACGGAGAAGTTTGAAAGTTCACGCTCGAACGCGAGTTCAAACTGGAAGAACAATAATTCCTCGGAATCAAACTACCCGAAAGGCTTAATTGTCGCCTTTGCACTGAAAAAGATGACAGCCGGAAGTTCTGCTGAGGAAAATGGATCTCATGATGTAACCACTGATAAGACTGAATGCAAAACAGACGAAGGATTAGATTCTTCAAAGAATGACTCTGAGAAAACTGAGCAAACAGGGGGAGAAAACGTGGGTAAAGATGAAGAAATCCAGAAGAGTTCTGATGATAAGATCGAAGAAGCTGATAAGAAAAACGATTCGGGCAATGAAGAAAAACCTGAAGTGGAAGATCAGTCTATGGACGATCCCACCGACGAACGTGAAGAGGCTGAAGAAAAACCCACATTTGCCTCATCTAGAAACGACAAGAACGTTGTTTCACGCGAGGATTTGAAGGCTATTTTTCAGAAGTTCGGAAGTATCAAGGTATCTCATAGATTCTTCTTCATTGAATTGCTGTGTTCATCAGAATGTTTCAAGAATATTTATTGTTCCATTTCGACTTTGAATCATGCTTTTGATGTTCGTATTGCTTTACTGTTTTCAGTTCTTATATGCATGCCAATTCTGACACATCTTCATCTTCATCTTGTTTTACTCTCTTTCTGTTCATTGGTTGGGATGATGAAGTACATTGATTTTAAGATGGGAGAAGAGTCTGGCTATATCAGGTTTGACGAGCCTGAAGCTGCCCAGAAGGCTCGTGCGGCTGCAGTCCTTGCTGATCAAGGGGGATTGGCTGTTAAGAATTTTATAGCCACTTTAGAACCAGTTTCAGGTGAGGCTGAGAAGGAGTATTGGAGGGCGCTCCGCAGCAGCCAAGAAAAGCATCATCGTGACTTTAAGGGCAACCGTGGAAGGGGTGGTAAATTCAACAGAGGTGGAAAGCATGGTCGGTCGAGAGGATACGACAACAACCGAGGTCGCCCGAACAAAGCTCAAAAAGTTTGA 1695 42.36 MENSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKKTIGASPDGSILYLVPLRVYAFFLLWSFVDLNWKITVVDLSLVCSFSRMKGHLHLAQDVKPDAIPEDTVKAVAETLKSSSTIKVSEDGKKIGRIAELSKPEEMIEQLDDRTIAASPFQYDVKLEDVEAFFGQIAKVNSVRLPRHVSDKRVFCGTALVEFSAEEDAEKVLAESLLYAGAKLELKPKRDFDEERSKETEKFESSRSNASSNWKNNNSSESNYPKGLIVAFALKKMTAGSSAEENGSHDVTTDKTECKTDEGLDSSKNDSEKTEQTGGENVGKDEEIQKSSDDKIEEADKKNDSGNEEKPEVEDQSMDDPTDEREEAEEKPTFASSRNDKNVVSREDLKAIFQKFGSIKVSHRFFFIELLCSSECFKNIYCSISTLNHAFDVRIALLFSVLICMPILTHLHLHLVLLSFCSLVGMMKYIDFKMGEESGYIRFDEPEAAQKARAAAVLADQGGLAVKNFIATLEPVSGEAEKEYWRALRSSQEKHHRDFKGNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1470112 1473578 - Cp4.1LG07g02290.1 Cpe07g00227 472034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00227 564 Gene3D - 137 234 IPR012677 -
Cpe07g00227 564 PANTHER BNAANNG34180D PROTEIN 2 45 - -
Cpe07g00227 564 PANTHER BNAANNG34180D PROTEIN 70 292 - -
Cpe07g00227 564 PANTHER BNAANNG34180D PROTEIN 454 564 - -
Cpe07g00227 564 PANTHER LUPUS LA PROTEIN-RELATED 270 392 IPR045180 -
Cpe07g00227 564 SUPERFAMILY Winged helix DNA-binding domain 8 130 IPR036390 -
Cpe07g00227 564 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 152 204 IPR000504 GO:0003723
Cpe07g00227 564 MobiDBLite consensus disorder prediction 271 370 - -
Cpe07g00227 564 SMART la 8 128 IPR006630 -
Cpe07g00227 564 MobiDBLite consensus disorder prediction 236 252 - -
Cpe07g00227 564 CDD RRM1_La 145 217 - -
Cpe07g00227 564 MobiDBLite consensus disorder prediction 221 235 - -
Cpe07g00227 564 SMART rrm1_1 145 217 IPR000504 GO:0003723
Cpe07g00227 564 CDD LA_like_plant 10 127 - -
Cpe07g00227 564 Gene3D - 2 132 IPR036388 -
Cpe07g00227 564 MobiDBLite consensus disorder prediction 221 252 - -
Cpe07g00227 564 SUPERFAMILY RNA-binding domain, RBD 135 221 IPR035979 GO:0003676
Cpe07g00227 564 Gene3D - 444 533 IPR012677 -
Cpe07g00227 564 PANTHER BNAANNG34180D PROTEIN 270 392 - -
Cpe07g00227 564 MobiDBLite consensus disorder prediction 521 564 - -
Cpe07g00227 564 ProSiteProfiles La-type HTH domain profile. 4 135 IPR006630 -
Cpe07g00227 564 Coils Coil 326 346 - -
Cpe07g00227 564 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 229 IPR000504 GO:0003723
Cpe07g00227 564 MobiDBLite consensus disorder prediction 545 564 - -
Cpe07g00227 564 MobiDBLite consensus disorder prediction 521 535 - -
Cpe07g00227 564 Pfam RNA binding motif 452 531 IPR014886 GO:0003723
Cpe07g00227 564 ProSiteProfiles xRRM domain profile. 358 547 IPR014886 GO:0003723
Cpe07g00227 564 PANTHER LUPUS LA PROTEIN-RELATED 2 45 IPR045180 -
Cpe07g00227 564 PANTHER LUPUS LA PROTEIN-RELATED 70 292 IPR045180 -
Cpe07g00227 564 PANTHER LUPUS LA PROTEIN-RELATED 454 564 IPR045180 -
Cpe07g00227 564 Pfam La domain 14 111 IPR006630 -
Cpe07g00227 564 MobiDBLite consensus disorder prediction 278 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00227 K11090 LA, SSB; lupus La protein - csv:101204162 516.538
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00227 Cpe11g00527 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00227 Cpe-Chr7:1470112 Cpe15g00333 Cpe-Chr15:4512733 4.38E-10 dispersed
Cpe11g00527 Cpe-Chr11:3122734 Cpe07g00227 Cpe-Chr7:1470112 3.81E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g328 . . . . . . . . Cmo05g00630 Cmo12g00218 . Cma05g00604 . Car12g00248 Sed01g1286 Cpe07g00227 . Bhi04g00824 Tan02g2579 Cmetu03g0669 . Hepe10g0345 . Lcy13g1390 . . . . . . . . . . . . . . Cme03g01728 . . . Bda13g01316 Bpe14g00532 . . Bma02g00072 . . . . Cma12g00264 . Car05g00546 Cpe11g00527 . . . . . . . . Cla08g01236 Cam08g1693 Cec08g1272 Cco08g1393 Clacu08g1390 . Cre08g1175 Lsi08g01099 . Chy03g01232 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009894 1 1 0 1 1 1 2 1 0 1 1 0 2 1 1 2 1 3 2 0 1 1 1 0 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00227 Cpe_Chr07 FPKM 35.288288 36.412422 54.567993 55.71674 11.374161 9.495648 11.94782 40.794884 39.35075 39.205269