Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00246 GGGACAAAAAATGATTTGGGAAATTTGTACGGGAAGTTAGGCGATCGAGGCGCGCTATTCGTTTGGGTTGGAATCTGTAAACCCACTCAGTTTCTCCTTCTGCATCAACATCAACCAGGAATACTAGAACAAGGCTCTCCGCTTATCACTCAGATCTCTGCACCTCCCGCCAACATTGATCTCTCTCGCTCTCGCAACCTTCCCGGCCAGCGTCGTCTCCGCTTGATCAGAGCTTGCACTATAGACACTCACAATGCTAGGATCACGTCAAAGGCCATACTTAAAGCCATATGTATACATTATTATTTTGGTTTCGGTGGTCAGCATATTTCTATTTGGCACCTACGTTTTTCCACCAAGAAGCTCTTTCATTTTGGGTGTATCAATGGTGAATTTAATCAGCGCCGGCCCACTGCTTCCCGGGAATTAACAGATGCAGAGATTGCATCTCGGGTTGTAATTAGGGAAATTTTGAAGAGACCTCTAGCTCAATCCAAGAATCCGAAAATTGCCTTTATGTTTTTGACTCCAGGTCCACTACCCTTTGAGAAGCTCTGGCATAAATTTTTTGATGGTCATGACGGCAGATTTTCTATATATGTGCATGCGTCTAGAGAAAAAGTATCACATTCAAGCCCCCATTTTGTAGGTCGTGACATTCGCAGTGAAAAGGTAGCCTGGGGAGAAATGTCTATGGTTGATGCAGAGAAGAGACTTTTGGCAAATGCACTTATAGACCCTGATAATCAGCACTTTGCTTTGTTATCTGAAAGTTGTGTACCTCTTCACGAATTCGATTTTGATGATCCTGGTCCCCATGGAAGTGGTAGGTATTCAGAGCGCATGTTACCTGAAATTGAAAAGAAAGACTTTCGTAAAGGTTCTCAGTGGTTTTCCATGAAGCGACACCATGCTATTATTGTGATGGCTGACAGTCTTTACTATACAAAATTCAAGCTTTACTGTAAGCGAACTAAGGATGGCCCGAACTGCTATGCCGACGAACACTATTTTCCAACCTTTTTCAATATGATCGACCCTGGTGGAATTGCAAATTGGTCCGTAACACATGTAGATTGGACTGAGGGAAAGTGGCATCCAAAATCATATAGGAATCAAGATGTCACCTATGAGCTTCTGAAGAATATTGCTTCGTTAGATAAGGCCGCTCAAATTACGAGTACTGCACCGAAACTCTGGGAAAATTGTCCCACCTTTTCTCTAACTACACGGTGGTTGTTTAGGCCATCTCGTTGCCCTCCTCGATCGAGACGTCATTTAAGAGGTTCACAACATTGTCCTGAAGAGAAAGTCAACACTTTAGGTGGTAAACACAATCAAGAAACTGGTTATGATTGTGATGGTCATATG 1371 43.11 GTKNDLGNLYGKLGDRGALFVWVGICKPTQFLLLHQHQPGILEQGSPLITQISAPPANIDLSRSRNLPGQRRLRLIRACTIDTHNARITSKAILKAICIHYYFGFGGQHISIWHLRFSTKKLFHFGCINGEFNQRRPTASRELTDAEIASRVVIREILKRPLAQSKNPKIAFMFLTPGPLPFEKLWHKFFDGHDGRFSIYVHASREKVSHSSPHFVGRDIRSEKVAWGEMSMVDAEKRLLANALIDPDNQHFALLSESCVPLHEFDFDDPGPHGSGRYSERMLPEIEKKDFRKGSQWFSMKRHHAIIVMADSLYYTKFKLYCKRTKDGPNCYADEHYFPTFFNMIDPGGIANWSVTHVDWTEGKWHPKSYRNQDVTYELLKNIASLDKAAQITSTAPKLWENCPTFSLTTRWLFRPSRCPPRSRRHLRGSQHCPEEKVNTLGGKHNQETGYDCDGHM 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1594717 1602390 + Cp4.1LG07g02060.1 Cpe07g00246 472053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00246 457 Pfam Core-2/I-Branching enzyme 266 383 IPR003406 GO:0016020|GO:0016757
Cpe07g00246 457 PANTHER - 121 400 - -
Cpe07g00246 457 MobiDBLite consensus disorder prediction 422 457 - -
Cpe07g00246 457 MobiDBLite consensus disorder prediction 428 442 - -
Cpe07g00246 457 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 121 400 IPR044174 GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00246 - - - csv:101204840 482.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00246 Cpe-Chr7:1594717 Cpe18g00633 Cpe-Chr18:6544954 3.24E-131 dispersed
Cpe07g00246 Cpe-Chr7:1594717 Cpe11g00622 Cpe-Chr11:3945260 1.75E-133 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g220 . . . Bda03g00462 . . . . . Cmo12g00236 . . . Car12g00269 . Cpe07g00246 . Bhi04g01067 . . . . . Lcy13g1332 . . . . . . . . . . . . . . Cme03g01813 . Blo18g00052 . Bda13g01364 . . . . . . . . Cma12g00284 . . . . . . . . . . . . . . . . . . . . Chy03g01182 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000821 3 8 2 2 3 2 4 2 2 2 2 2 4 3 3 4 2 5 5 2 3 3 2 2 3 2 2 6 4 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00246 Cpe_Chr07 FPKM 7.449932 7.152419 9.108842 7.862113 18.926804 19.422873 16.434431 6.199556 7.059966 7.427053