Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00260 ATGAGGTGCGTCGCCGGGATATTGAACGCGTTTCTGGCCGATTCGGAGTTTGAGCTTACCGAGTTGAAGATGGCTGTCAAAACAGCGCAATCATTTAGAGATCGGACGCATGAATTCCAGAACATAGCAGAAAGGCTAAAGAAGTCTTTCTCATCTGGCACTGGAACAACAGGACCAAGTGTTGGTTTAAAATCAGAAGAGCAGCGTTCTGCTGTGGCTCTGCAGTCAGAATTTAATAAGAGGGCTTCCAGGATTGGGTTAGGGATACACCAGACATCTCAGAAACTCTCAAAGTTGGCAAAATTTACGAAATTGAGCTTAATGCATGTGGAGGAAGAGATGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCACTTATTAAGCAGGACATTACAACATTGAACTCTGCAGTTGTAGATCTTCAGCTTCACTGCAACTCTAGACATGAAAATGGAAACATGTCCAGCGATACTACTAGTCATTCAACCACTGTGGTGGATGATCTTAAGAATCGCCTTATGAGCACAACTAAAGAATTTAAAGAAGTTCTAACTATGCGAACAGAAAATTTGAAGGTTCATGAGAATAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACAAATCCTTTTATGCGCCAACGCCCTTTAGCTTCCAGGTCCACTGCTGGTGCCTCAAGCGCACCCCCTCCTCCGTGGGCCAAGCCATCTACATCTTTTTCCAAAACATCTCCCGGGAAGCAGGTAGATGGGGAGAGTCAACCATTGTTACAGCAGCAACAGCAACAGCAACAGCAACAGCAACAGATGGTAGATGGGGAGAGTCAACCATTGTTACAGCAGCAACAGCAACAGCAACAGCAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATGTAGAATCCACTATTCATGAATTGAGCAATATCTTCAACCAGCTGGCAACTCTGGTTTCTGAACAAGGAGAGATTGCAATCAGGATTGACGAGAATATGGACGATTCTCTGGCAAACGTCGAGGGGGCACAGGGAGCTTTGCTCAAGTATCTAAACAACATATCTTCAAATAGGTTCATGTCGAGAAGGAATGTGTCTATGCCTTCTCCGTCATCTAATTTGGAGAATGCATCGCTCAACAACTCATCTTACAACAGATTGAAGATCGGCCATTATAGATCTCGTCCTCTTATTCATGGGAGGATTTTAACAAGGACGACAAATGGTTTAAATGGAAGAGTTATGGTAAATACGACAACTAAACTTGGGAATATAGCCGCGAAGTTAATTTCTCCCCCCAGAAAATCTCTATCTAGCCTCACCTCCCTACTCCCCACCCTCTCTGCCACCGACCGCCGCGCAGCCGCCCGCCGTCTCTCTCTTTTCTGCTTCGCAGTCGCACCGTCCTCTCTTTCGCCGGCGGCTTCTTCTTTTCCGCTTGTCCGAACCGCCGCCCGCAATCCTTCCGCCAACCAAACCCTCAAACCCTGGGTTTCACTATCTTCACGGAGAGGGCTTTTGCCCCTAAAAACCCGAATGCTTCGCCCCTGCATCCGTTCCTCCTCCCCTCTCGCCGCCATTGGAGTTCAAAGCCCAACTCCCATTCTTAACCTGCCATGCGTTTTGCTTCAATTCCCGCCCTTAATTATCCTCACCGACTTACCCGGAAATTTTGCTCTTCGTATAAACATCATCGAAGACAGCAATACTCACAGTTGGAAATACCTCGATTTGCAGTCACGAATGCAGAACTATGCGGCTTCTGGTGATCTTCCTGAAGCTTTAGAGACTCTGAATTTCATGAAAAATGTTGCCGGGAAGCCCTCTGTATATGATTACAACGCGTTGTTTCATAGATATTTGAGTTCTGGAAATGTTTCGGTAGAACAATTGGTTCAGGTCTATATCGGAATGAAGAATCTGGGGCCATCCCCAAACAGAACAACTTTCAACATACTTCTTAATGGATTTCTGTCATTAGGTTACCTGAGAGATGCATATTTCTTTGCAGAAGAGATGACCAAAAGTGGGATGAATCCATCTTTCACATCCTTGTCCAAATTGCTTAAAAGTTCGATGAAATCAGATCAAATGAGAAGTGATGGATGTAAGCCGAACGTCGTTACTTACACGGTTATTATTAAGTTTCTTTGTGATGATGGGAGGATTGTTGAAGCATTTGAAATCTTGAAATCCATGGAAATTGAGGGTTGTGATCCAGATTTGGTAACTTATAATATAATTATCCGTGCACTTTGCCTTTATGATAGAACGTGCGATGTTGTTGAGCTTTTACAGTTGATTCATCGTAGAGGTTTCTCTCCCGATCCGTATACATATGCTGCTTTGGCTGGAGGGATTATGAGGGTAGGAAAGACCGAAATTGCTTATGAGTTATTGCGTAAAGTGTTCACGAGAAACTGTACTGTTGACGTTGTTGTGTACAATATATACTTTCATTGCTTGTGTCGAAATAATAGATCAAGAGAAGCCTTTTCTCTGTTGAAAAGTATGACGAAAGGAGGTATTGTTCCAACTACTGTGTCGTATAATACAGTTTTAAGGGGCTTTTGTAGAGACAATGAAACTCAACATGCTTTGAAGCTATTAGAATGCTTCGAGTGGCCTGAGAGCGGCCCTGATGTCGTTTCATTCAATACGGTTCTCTCCGCTGCATGCGAACTTGGGGATTTAGTTCTAATTCAGAGGGTTTTGCAATACATGGAATGTAGAGGTGTTGAGCCAGATCATGCTTTGAAGCTATTAGAATGCTTCGAGTGGCCTGAGAGCGGCCCTGATGTCGTTTCATTCAATACGGTTCTCTCCGCTGCATGCGAACTTGGGGATTTAGTTCTAATTCAGAGGGTTTTGCAATACATGGAATGTAGAGGTGTTGAGCCAGATGTAAGAAGCTTGACTTGTTTGGTTCGATATTTGTCTACAGTGGGACGATATTCAGAATGTTGGAGATTATTGGAATACATGATGTGTAACGGCCCCGTTCCCTCGAGTGTCACTTTCAATATCTTCCTAGACAAGCTTTGCAGAAATGGATTTACTAGTAAGGCATACCAGATATTTGAGCGTATACAAAAAGCTGGGTTATCGCTTGACCGAAAAACATATAATATTCTTCTACGTTCCTTTTTAAGAAAGCGTGATATCGATCTGGTGGAACGTCTTATTCAGGATATGTACAAGCAGAGATTGAATCCTGATCTTTTTATATATGGTTCCAACATTAGTGGACTTTGTCAAGAAGGTAACATTTCTACTGCTCTCTTTACTAGGGGTCGAACTCTAGGGAATGGACTTACTCCATCTATGGAAACGTGCAATAGATCGTTGAAGACCGTTATCCATAAAAATAAGCATCGGGATATGACTTGTCACGGGATGGTGACGGCCATGGGAAAATTTGTTCGAAATAGAATTCGAGGGCTTGTGAATGGCTATATGTGTGAAGAACGAGCTATTGACCACATTCTCATCCCGTGCACCAACATCATGAAATGCGACGAGCAGTGTCGACGGACCTTTTCCATGAAGCTTGCCCTGTTTTTCCTGTCTCAATTCAGAAGCCAGCAAAATTTTGTTGAGGGATTGAACAAACTCAGCACAACGCCATTTATGTTGATCACTGGTTGA 3699 43.31 MRCVAGILNAFLADSEFELTELKMAVKTAQSFRDRTHEFQNIAERLKKSFSSGTGTTGPSVGLKSEEQRSAVALQSEFNKRASRIGLGIHQTSQKLSKLAKFTKLSLMHVEEEMAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLHCNSRHENGNMSSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFMRQRPLASRSTAGASSAPPPPWAKPSTSFSKTSPGKQVDGESQPLLQQQQQQQQQQQQMVDGESQPLLQQQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRIDENMDDSLANVEGAQGALLKYLNNISSNRFMSRRNVSMPSPSSNLENASLNNSSYNRLKIGHYRSRPLIHGRILTRTTNGLNGRVMVNTTTKLGNIAAKLISPPRKSLSSLTSLLPTLSATDRRAAARRLSLFCFAVAPSSLSPAASSFPLVRTAARNPSANQTLKPWVSLSSRRGLLPLKTRMLRPCIRSSSPLAAIGVQSPTPILNLPCVLLQFPPLIILTDLPGNFALRINIIEDSNTHSWKYLDLQSRMQNYAASGDLPEALETLNFMKNVAGKPSVYDYNALFHRYLSSGNVSVEQLVQVYIGMKNLGPSPNRTTFNILLNGFLSLGYLRDAYFFAEEMTKSGMNPSFTSLSKLLKSSMKSDQMRSDGCKPNVVTYTVIIKFLCDDGRIVEAFEILKSMEIEGCDPDLVTYNIIIRALCLYDRTCDVVELLQLIHRRGFSPDPYTYAALAGGIMRVGKTEIAYELLRKVFTRNCTVDVVVYNIYFHCLCRNNRSREAFSLLKSMTKGGIVPTTVSYNTVLRGFCRDNETQHALKLLECFEWPESGPDVVSFNTVLSAACELGDLVLIQRVLQYMECRGVEPDHALKLLECFEWPESGPDVVSFNTVLSAACELGDLVLIQRVLQYMECRGVEPDVRSLTCLVRYLSTVGRYSECWRLLEYMMCNGPVPSSVTFNIFLDKLCRNGFTSKAYQIFERIQKAGLSLDRKTYNILLRSFLRKRDIDLVERLIQDMYKQRLNPDLFIYGSNISGLCQEGNISTALFTRGRTLGNGLTPSMETCNRSLKTVIHKNKHRDMTCHGMVTAMGKFVRNRIRGLVNGYMCEERAIDHILIPCTNIMKCDEQCRRTFSMKLALFFLSQFRSQQNFVEGLNKLSTTPFMLITG 1232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1684677 1696451 + Cp4.1LG07g01940.1 Cpe07g00260 472067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00260 1232 Pfam Pentatricopeptide repeat domain 624 672 IPR002885 -
Cpe07g00260 1232 Pfam Pentatricopeptide repeat domain 897 932 IPR002885 -
Cpe07g00260 1232 Gene3D Tetratricopeptide repeat domain 592 712 IPR011990 GO:0005515
Cpe07g00260 1232 Gene3D Tetratricopeptide repeat domain 1038 1175 IPR011990 GO:0005515
Cpe07g00260 1232 PANTHER ATPASE EXPRESSION PROTEIN 3 713 933 - -
Cpe07g00260 1232 PANTHER OS04G0475800 PROTEIN 713 933 - -
Cpe07g00260 1232 Gene3D - 73 360 - -
Cpe07g00260 1232 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1055 1089 IPR002885 -
Cpe07g00260 1232 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 758 792 IPR002885 -
Cpe07g00260 1232 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 723 757 IPR002885 -
Cpe07g00260 1232 Pfam PPR repeat family 722 770 IPR002885 -
Cpe07g00260 1232 Pfam PPR repeat family 949 994 IPR002885 -
Cpe07g00260 1232 Pfam PPR repeat family 1019 1066 IPR002885 -
Cpe07g00260 1232 Pfam PPR repeat family 828 876 IPR002885 -
Cpe07g00260 1232 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1020 1054 IPR002885 -
Cpe07g00260 1232 SUPERFAMILY t-snare proteins 75 360 IPR010989 GO:0016020|GO:0016192
Cpe07g00260 1232 MobiDBLite consensus disorder prediction 205 236 - -
Cpe07g00260 1232 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 663 697 IPR002885 -
Cpe07g00260 1232 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 950 984 IPR002885 -
Cpe07g00260 1232 PANTHER OS04G0475800 PROTEIN 599 712 - -
Cpe07g00260 1232 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 828 862 IPR002885 -
Cpe07g00260 1232 PANTHER OS04G0475800 PROTEIN 927 1124 - -
Cpe07g00260 1232 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 985 1019 IPR002885 -
Cpe07g00260 1232 PANTHER ATPASE EXPRESSION PROTEIN 3 599 712 - -
Cpe07g00260 1232 TIGRFAM PPR: pentatricopeptide repeat domain 1058 1090 IPR002885 -
Cpe07g00260 1232 TIGRFAM PPR: pentatricopeptide repeat domain 725 758 IPR002885 -
Cpe07g00260 1232 TIGRFAM PPR: pentatricopeptide repeat domain 760 793 IPR002885 -
Cpe07g00260 1232 TIGRFAM PPR: pentatricopeptide repeat domain 830 863 IPR002885 -
Cpe07g00260 1232 TIGRFAM PPR: pentatricopeptide repeat domain 1022 1055 IPR002885 -
Cpe07g00260 1232 TIGRFAM PPR: pentatricopeptide repeat domain 865 887 IPR002885 -
Cpe07g00260 1232 MobiDBLite consensus disorder prediction 247 293 - -
Cpe07g00260 1232 MobiDBLite consensus disorder prediction 203 293 - -
Cpe07g00260 1232 Gene3D Tetratricopeptide repeat domain 713 774 IPR011990 GO:0005515
Cpe07g00260 1232 Gene3D Tetratricopeptide repeat domain 933 1037 IPR011990 GO:0005515
Cpe07g00260 1232 Gene3D Tetratricopeptide repeat domain 775 885 IPR011990 GO:0005515
Cpe07g00260 1232 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 305 367 IPR000727 -
Cpe07g00260 1232 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 898 932 IPR002885 -
Cpe07g00260 1232 PANTHER ATPASE EXPRESSION PROTEIN 3 927 1124 - -
Cpe07g00260 1232 CDD SNARE_syntaxin5 308 375 - -
Cpe07g00260 1232 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 29 48 IPR021538 -
Cpe07g00260 1232 ProSitePatterns Syntaxin / epimorphin family signature. 311 350 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cpe07g00260 1232 SMART tSNARE_6 300 367 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00260 Cpe-Chr7:1684677 Cpe04g00673 Cpe-Chr4:6783720 1.18E-23 dispersed
Cpe11g00567 Cpe-Chr11:3361050 Cpe07g00260 Cpe-Chr7:1684677 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00260 K08490 - cmax:111496160 740.339