Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00261 ATGGATGTTCCCTCGGTGGAACTAAATTGTGAAAGCGAAGAAGACTCTTACCCTTTATTAATGGCCCAGCCAGAAAACATCAGCAGCAGTGAGCATATCATTAACATAACTGGTACTGGTGATTCTGCTCCCTCTAGTTTGCCCCATGGTAGGAATTCAAATGGCTTAAATTCATCACAGCCTGAAGATAGACCTTCAAGTAGTACACGAGTTCCTTCGTCTCAACCTTCAATTTCTACTACTGGATCAAATTCTAGAAATTCTTCATTCATAAGAAGAGGAGATTCGCGACGTCGTAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTGCTACTCACTATGAGCCAGATTATTGCAGCTATTATAGTATTATCATTGTCAAAGAATGAAAAACCTCGTGCACCTTTGTTTGCATGGATTGTGGGATATGCATCTGGGTGTGGTGCGACACTTCCTCTTCTCTATTGGCGTTATCGACACCGTAATCAGGCTTCAGAACAAGATTCTCTTCAACCTAGTCAGAATTCTAATCGCATTAATGTTCCTGCTGGGCCATTCTCTGTTTCAGTTTCTAGGGCATCAGAAGGCGAAGAACTTCATCATCCTGCCCCATCCCCCAGAGGCAGTGTAGGGTCAGGATTACTGACAGCAAGGGTAAAAGTTTTGGTTGAATATTTTAAGATGGGCCTGGATTGCTTCTTTGCTATTTGGTTTGTAGTTGGTAACGTTTGGATCTTTGGAGGGCATTCATCAGCCTCTGAGGCTCCTAATTTGTACAGGCTATGTATAGTGTTTCTTACCTTTAGCTGTATTGGTTATGCCATGCCCTTCATTCTATGTGTAACCATATGCTGTTGCCTACCTTGTATAATTTCCATCCTTGGCTTTAGAGAGGACTTGACACAGACCCGAGGAGCCACAACAGAATCGATTAATGCATTGCCAACTTATAAGTTTAAGCTGAAGAAAAGTAGAAGTGGAGATGATAGAGAAAACAACTCCGGGGCTGGTGAAGGAGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAGCGAGCGATTTCAGGAGAAGATGCTGTCTGTTGCATCTGCTTGGCGAAGTATGCTAACAATGATGAACTGAGAGAGTTGCCATGTTCTCACTTTTTCCACAAGGAATGTGTAGATAAATGGTTGAAGATCAACGCCCTGTGCCCGCTTTGCAAAAACGAGGTCGGTGAGAGTATCGTTGGCTCTCTTGAGGGGACAAATAGACAACAACAGGGTGATTAG 1281 43.25 MDVPSVELNCESEEDSYPLLMAQPENISSSEHIINITGTGDSAPSSLPHGRNSNGLNSSQPEDRPSSSTRVPSSQPSISTTGSNSRNSSFIRRGDSRRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQPSQNSNRINVPAGPFSVSVSRASEGEELHHPAPSPRGSVGSGLLTARVKVLVEYFKMGLDCFFAIWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLTQTRGATTESINALPTYKFKLKKSRSGDDRENNSGAGEGGGGVVAAGTEKERAISGEDAVCCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKNEVGESIVGSLEGTNRQQQGD 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1697248 1702576 - Cp4.1LG07g01820.1 Cpe07g00261 472068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00261 426 SUPERFAMILY RING/U-box 357 410 - -
Cpe07g00261 426 SMART ringv_2 363 405 IPR011016 GO:0008270
Cpe07g00261 426 MobiDBLite consensus disorder prediction 1 101 - -
Cpe07g00261 426 ProSiteProfiles Zinc finger RING-type profile. 364 405 IPR001841 -
Cpe07g00261 426 MobiDBLite consensus disorder prediction 325 345 - -
Cpe07g00261 426 CDD RING-H2_RNF111_like 363 405 - -
Cpe07g00261 426 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 423 - -
Cpe07g00261 426 SMART ring_2 364 404 IPR001841 -
Cpe07g00261 426 Pfam Ring finger domain 364 405 IPR001841 -
Cpe07g00261 426 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 423 - -
Cpe07g00261 426 MobiDBLite consensus disorder prediction 22 90 - -
Cpe07g00261 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 412 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00832 Cpe-Chr6:5350548 Cpe07g00261 Cpe-Chr7:1697248 1.28E-48 dispersed
Cpe06g00833 Cpe-Chr6:5355990 Cpe07g00261 Cpe-Chr7:1697248 3.09E-55 dispersed
Cpe07g00261 Cpe-Chr7:1697248 Cpe08g00516 Cpe-Chr8:3336974 3.22E-46 dispersed
Cpe07g00261 Cpe-Chr7:1697248 Cpe07g00269 Cpe-Chr7:1750519 0 proximal
Cpe11g00569 Cpe-Chr11:3372677 Cpe07g00261 Cpe-Chr7:1697248 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00261 - - cmax:111496220 813.527