Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00268 ATGTTACTGTTGTTAGATGTGTATATTCATGATTATTTGGTGAAAAGAGATTTGAAGGCTACGGCTCAGGCCTTTCAAGCAGAGGGAAAAGTGTCTTCGGACCCTGTTGCTATTGATGCACCGGGAGGGTTTTTGTTCGAGTGGTGGTCGGTATTCTGGGATATATTCATTGCCAGGACTAACGAAAAGCACTCCGATGTTGCTGCATCGTATATCGAGCAACAGCAGTCACAGCAGCAGCAGCAGCAAACGCAGCAACAGCAACAGCCACGAAGAGATGGAGCTCAACTCTTAAATGGATCTTCAAATGGTTTCGTTGGAAATGATCCACTTATGCGCCAGAATCCTGGATCCGTAAATGCATTAGCTACAAAAATGTATGAGGATCGATTAAAACTACCCCTTCAGAGGGATTCTCTAGACGAGGCGGCTATGAAACAAAGATATGGGGAAAATGTTGGGCAGCTGTTGGACCCGAATCATGCTTCAATTCTGAAGTCAGCTGCAGCAACCAGCCAGTCCTCAGGGCAAGTGTTACACAGTACTGCCGGGGGAATGTCTCCTCAAGTTCAGTCTAGGAGCCAGCAATTGGCAGGTTCCGCACCGGATATAAAGAGCGAGATCAACGCAGGTTTGAATCCTAGAGCTGCCGGTCCGGAGGGATCATTGATGGGCATTCCTGGATCAAATCATGGTGGCAATAATTTGACCTTAAAGGGATGGCCTCTCACGGGGCTAGAGCAGCTCCGTTCCGGGATCCTTCAGCAACAAAAATCTTTCATACAGGCACCTCAGCAATTTCCTCAGCTTCAGATGTTGACACCGCAACACCAACAACTCATGCTCGCTCAGCAGAATTTAACGTCACCTTCTGTTAACGACGATGGTAGAAGATTGAGAATGCTTTTGAACAGTCGAATTTCTAAAGACGGGCTTTCGAATTCTGTTGGTGATGTTGTTCAAAACGTTGGATCTCCTCTTCAAACTGGCAGTCCGCTTTTGCAACGTGGAGACAACACAGAGATGATGCTTAAGATAAAAATAGCTCAATTACAGCACCAACAACAGCACCAACAAAATAATAGTCAGCAACAGCAGCAACAGCAGCAGCAGCAGCTTCAGCAGCATGCGCTTTCTAATCCACAATCACAGAGCTCAAACCACAATTTGCATCAGCAAGAAAAAATCGGGGGTGCTGGCAGTGTCACGATGGATGGTAGCATGTCGAACTCATTTCGTGGAAATGATCAGGTTTCAAAAAGTCAGACCGGGAGAAAGAGGAAGCAGCCAGTATCATCTTCGGGTCCAGCAAATAGCTCAGGGACAGCGAATACAGCAGGGCCGTCCCCAAGTTCCGCTCCTTCAACGCCCTCGACTCACACTCCTGGAGATGCAATCTCAATGCCTGCTTTGCCTCACAGTGGTAGTTCATCTAAACCTTTGATTATGTTCAACAGTGATGGTACTGGAACTTTTACATCTCCCTCAAATCAGTTGTGGGATGATAAAGAACTTGAATTGCAGGCTGATATGGATCGCTTCGTGGAGGACGGGTCTCTTGATGATAATGTCGAGTCTTTTTTATCCCATGATGATACGGACCCGAGAGATCCCGTGAATTCTGTTCGAGCAAGCTCGAGCAAAGTCACCTCGTGCCACTTTTCATCTGATGGAAAATTGCTTGCTAGTGGCGGCCACGATAAAAAGGCTGTATTATGGTACACGGAAAATTTGAAGCCGAAAACGTCACTTGAAGAACATGGTTCTATGATCACCGATGTTCGTTTCAGTCCTAGCATGCCCCGTCTAGCTACATCTTCATTTGACCGAATTGTCCGGGTTTGGGATGCCGACAATCCATGTTATACTCTACGTAGCTTTACGGGACATTCGACTTCTGTTATGTCTTTGGACTTCCATCCAAAGAAGGATGACCTTATCGGCTCTTGCGATGGCGACGGTGAAATTCGATACTGGAATATCACTAATGGCAGTTGTGCAGCAGTATTCAAGGGCGGTACAGGCCAGCTGAGATTTCAACCTCGTCTTGGAAGGTACTTGGGTGCGGCTATAGATAATGTCGTGTCCATTTTTGATGTCGAGACGCAAGCTCGTCTGCATACGTTACAGGGCCATACGAAAACGATTAATTCTCTTTGTTGGGATCCTTCTGGAGAGTTTTTGGCATCCGTTAGTGAGGATTCCGTTCGAGTATGGTCGCTTGCTTCCGGGAGCGAGGGCGAATCCATTCACGAGTTGAGCATTAACGGGAATAAGTTCCACTCTTGTGTTTTCCATCCCACCTTTTCTACTTTACTGTCATTAGAGTTTTGGAACACGAGCGAGAACAAGACGATGACACTGTCAGCTCATGAAGGTCTAATATCTGCCTTAGCAGTGTCCACCGCGTCGGGTCTAGTTGCTTCGGCCAGCCACGATAATATGACCCCAAATTCTGACAAAACTATGCCTGTAATTGGTACTCAATCATGGTAG 2496 46.71 MLLLLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIEQQQSQQQQQQTQQQQQPRRDGAQLLNGSSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDEAAMKQRYGENVGQLLDPNHASILKSAAATSQSSGQVLHSTAGGMSPQVQSRSQQLAGSAPDIKSEINAGLNPRAAGPEGSLMGIPGSNHGGNNLTLKGWPLTGLEQLRSGILQQQKSFIQAPQQFPQLQMLTPQHQQLMLAQQNLTSPSVNDDGRRLRMLLNSRISKDGLSNSVGDVVQNVGSPLQTGSPLLQRGDNTEMMLKIKIAQLQHQQQHQQNNSQQQQQQQQQQLQQHALSNPQSQSSNHNLHQQEKIGGAGSVTMDGSMSNSFRGNDQVSKSQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGSSSKPLIMFNSDGTGTFTSPSNQLWDDKELELQADMDRFVEDGSLDDNVESFLSHDDTDPRDPVNSVRASSSKVTSCHFSSDGKLLASGGHDKKAVLWYTENLKPKTSLEEHGSMITDVRFSPSMPRLATSSFDRIVRVWDADNPCYTLRSFTGHSTSVMSLDFHPKKDDLIGSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYLGAAIDNVVSIFDVETQARLHTLQGHTKTINSLCWDPSGEFLASVSEDSVRVWSLASGSEGESIHELSINGNKFHSCVFHPTFSTLLSLEFWNTSENKTMTLSAHEGLISALAVSTASGLVASASHDNMTPNSDKTMPVIGTQSW 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1739884 1746932 - Cp4.1LG07g01850.1 Cpe07g00268 472075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00268 831 ProSiteProfiles Trp-Asp (WD) repeats profile. 709 749 IPR001680 GO:0005515
Cpe07g00268 831 MobiDBLite consensus disorder prediction 811 831 - -
Cpe07g00268 831 ProSiteProfiles Trp-Asp (WD) repeats profile. 627 669 IPR001680 GO:0005515
Cpe07g00268 831 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 4 78 - -
Cpe07g00268 831 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 627 665 - -
Cpe07g00268 831 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 33 IPR006594 GO:0005515
Cpe07g00268 831 Gene3D - 521 677 IPR015943 GO:0005515
Cpe07g00268 831 MobiDBLite consensus disorder prediction 175 229 - -
Cpe07g00268 831 Coils Coil 348 368 - -
Cpe07g00268 831 MobiDBLite consensus disorder prediction 351 396 - -
Cpe07g00268 831 MobiDBLite consensus disorder prediction 471 497 - -
Cpe07g00268 831 SUPERFAMILY WD40 repeat-like 537 815 IPR036322 GO:0005515
Cpe07g00268 831 SMART Lish 1 33 IPR006594 GO:0005515
Cpe07g00268 831 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 85 815 IPR044716 GO:0003714
Cpe07g00268 831 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 85 815 - -
Cpe07g00268 831 ProSitePatterns Trp-Asp (WD) repeats signature. 603 617 IPR019775 -
Cpe07g00268 831 Pfam WD domain, G-beta repeat 580 616 IPR001680 GO:0005515
Cpe07g00268 831 Pfam WD domain, G-beta repeat 538 573 IPR001680 GO:0005515
Cpe07g00268 831 Pfam WD domain, G-beta repeat 623 660 IPR001680 GO:0005515
Cpe07g00268 831 Pfam WD domain, G-beta repeat 706 740 IPR001680 GO:0005515
Cpe07g00268 831 Gene3D - 678 822 IPR015943 GO:0005515
Cpe07g00268 831 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 584 619 - -
Cpe07g00268 831 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 542 573 - -
Cpe07g00268 831 SMART WD40_4 702 740 IPR001680 GO:0005515
Cpe07g00268 831 SMART WD40_4 577 616 IPR001680 GO:0005515
Cpe07g00268 831 SMART WD40_4 663 699 IPR001680 GO:0005515
Cpe07g00268 831 SMART WD40_4 535 574 IPR001680 GO:0005515
Cpe07g00268 831 SMART WD40_4 781 816 IPR001680 GO:0005515
Cpe07g00268 831 SMART WD40_4 620 660 IPR001680 GO:0005515
Cpe07g00268 831 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 4 78 IPR044716 GO:0003714
Cpe07g00268 831 MobiDBLite consensus disorder prediction 72 117 - -
Cpe07g00268 831 MobiDBLite consensus disorder prediction 525 547 - -
Cpe07g00268 831 MobiDBLite consensus disorder prediction 175 202 - -
Cpe07g00268 831 CDD WD40 538 814 - -
Cpe07g00268 831 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 709 745 - -
Cpe07g00268 831 ProSiteProfiles Trp-Asp (WD) repeats profile. 584 619 IPR001680 GO:0005515
Cpe07g00268 831 ProSiteProfiles Trp-Asp (WD) repeats profile. 542 583 IPR001680 GO:0005515
Cpe07g00268 831 MobiDBLite consensus disorder prediction 351 497 - -
Cpe07g00268 831 MobiDBLite consensus disorder prediction 403 463 - -
Cpe07g00268 831 Pfam LisH 4 29 IPR006594 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00268 - - - csv:101221759 1245.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01587 Cpe-Chr3:12253494 Cpe07g00268 Cpe-Chr7:1739884 2.90E-31 dispersed
Cpe07g00268 Cpe-Chr7:1739884 Cpe08g00394 Cpe-Chr8:2487646 1.85E-59 dispersed
Cpe07g00268 Cpe-Chr7:1739884 Cpe07g00273 Cpe-Chr7:1796599 2.17E-40 proximal
Cpe11g00581 Cpe-Chr11:3452582 Cpe07g00268 Cpe-Chr7:1739884 5.62E-38 wgd
Cpe18g00457 Cpe-Chr18:5543573 Cpe07g00268 Cpe-Chr7:1739884 1.52E-36 wgd
Cpe02g01673 Cpe-Chr2:13850977 Cpe07g00268 Cpe-Chr7:1739884 2.78E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g425 . . . . . . . . . . . . . . . Cpe07g00268 . Bhi04g01023 . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01277 . . . Bma02g00036 . . . . . . . . . . . . . . . . Cla08g01295 Cam08g1754 Cec08g1334 Cco08g1458 Clacu08g1451 . Cre08g1238 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49722 PF00400 WD40 0.00034 CL0186 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00268 Cpe_Chr07 FPKM 115.259109 119.642067 61.915501 66.308044 51.852974 41.471062 53.770023 95.38324 93.967148 103.194595