Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00273 CGAAAAGGGTTCTTGTTTTTCGCTTCTGGGTTTGGTGTTTTTGGCCGAGAAGAGCTCGATACGAGCTATAGGAGCTTGTTAGATGTGTATATTCATGATTATTTGGTGAAAAGAGATTTGAAGGCTACGGCTCAGGCCTTTCAAGCAGAGGGAAAAGTGTCTTCGGACCCTGTTGCTATTGATGCACCGGGAGGGTTTTTGTTCGAGTGGTGGTCGGTATTCTGGGATATATTCATTGCCAGGACTAACGAAAAGCACTCCGATGTTGCTGCATCGTATATCGAGCAAAGATATGGGGAAAATGTTGGGCAGCTGTTGGACCCGAATCATGCTTCAATTCTGAAGTCAGCTGCAGCAACCAGCCAGTCCTCAGGGCAAGTGTTACACAGTACTGCCGGGGGAATGTCTCCTCAAGTTCAGTCTAGGAGCCAGCAATTGGCAGGTTCCGCACCGGATATAAAGAGCGAGATCAACGCAGGTTTGAATCCTAGAGCTGCCGGTCCGGAGGGATCATTGATGGGCATTCCTGGATCAAATCATGGTGGCAATAATTTGACCTTAAAGGGATGGCCTCTCACTGGGCTAGAGCAGCTTCGTTCTGGGATCCTTCAGCAACAAAAATCTTTCATACAGGCGCCTCAGCAATTTCCTCAGCTTCAGATGTTGACACCGCAACACCAACAACTCATGCTCGCTCAGCAGAATTTAACGTCACCTTCTGTTAACGATGATGGTAGAAGATTGAGAATGCTTTTGAACAGTCGAATTTCTAAAGACGGGCTTTCGAATTCTGTTGGTGATGTTGTTCCAAACGTTGGATCTCCTCTTCAAGCAGGCAGTCCGCTTTTGCAACGTGGAGACAACACGGAGATGATGCTTAAGGTTTCAAAAAGTCAGACCGGGAGAAAGAGGAAGCAGCCAGTATCATCTTCGGGTCCAGCAAATAGCTCAGGGACAGCGAATACAGCAGGGCCGTCCCCAAGTTCCGCTCCTTCAACGCCCTCGACTCACACTCCTGGAGATGCAATCTCAATGCCTGCTTTGCCTCACAGTGGTAGTTCATCTAAACCTTTGATTATGTTCAACAGTGATGGTACTGGAACTTTTACATCTCCCTCAAATCAGTTGGCTGATATGGATCGCTTCGTGGAGGACGGGTCTCTTGATGATAATGTCGAGTCTTTTTTATCCCATGATGATACGGACCCGAGAGATCCCGTGAATTCTGTTCGAGCAAGCTCGAGCAAAGTCACCTCTTGCCACTTTTCATCTGATGGAAAATTGCTTGCTAGTGGCGGCCACGATAAAAAGGCTGTATTATGGTACACGGAAAATTTGAAGCCGAAAACGTCACTTGAAGAACATGGTTCTATGATCACCGATGTTCGTTTCAGTCCTAGCATGCCCCGTCTAGCTACATCTTCATTTGACCGAATTGTCCGGGTTTGGGATGCCGACAATCCATGTTATACTCTACGTAGCTTTACGGGACATTCGACTTCTGTTATGTCTTTGGACTTCCATCCAAAGAAGGATGACCTTATCGGCTCTTGCGATGGCGACGGTGAAATTCGATACTGGAATATCACTAATGGCAGTTGTGCAGCAGTATTCAAGGGCGGTACAGGCCAGCTGAGATTTCAACCTCGTCTTGGAAGGTACTTGGGTGCGGCTATAGATAATGGCCATACGAAAACGATTAATTCTCTTTGTTGGGATCCTTCTGGAGAGTTTTTGGCATCCGTTAGTGAGGATTCCGTTCGAGTATGGTCGCTTGCTTCCGGGAGCGAGGGCGAATCCATTCACGAGTTGAGCATTAACGGGAATAAGTTCCACTCTTGTGTTTTCCATCCCACCTTTTCTACTTTACTGTCATTAGAGTTTTGGAACACGAGCGAGAACAAGACGATGACACTGTCAGCTCATGAAGGTCTAATATCTGCCTTAGCAGTGTCCACCGCGTCGGGTCTAGTTGCTTCGGCCAGCCACGATAAGTTCATCAAGCTATGG 2010 47.36 RKGFLFFASGFGVFGREELDTSYRSLLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIEQRYGENVGQLLDPNHASILKSAAATSQSSGQVLHSTAGGMSPQVQSRSQQLAGSAPDIKSEINAGLNPRAAGPEGSLMGIPGSNHGGNNLTLKGWPLTGLEQLRSGILQQQKSFIQAPQQFPQLQMLTPQHQQLMLAQQNLTSPSVNDDGRRLRMLLNSRISKDGLSNSVGDVVPNVGSPLQAGSPLLQRGDNTEMMLKVSKSQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGSSSKPLIMFNSDGTGTFTSPSNQLADMDRFVEDGSLDDNVESFLSHDDTDPRDPVNSVRASSSKVTSCHFSSDGKLLASGGHDKKAVLWYTENLKPKTSLEEHGSMITDVRFSPSMPRLATSSFDRIVRVWDADNPCYTLRSFTGHSTSVMSLDFHPKKDDLIGSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYLGAAIDNGHTKTINSLCWDPSGEFLASVSEDSVRVWSLASGSEGESIHELSINGNKFHSCVFHPTFSTLLSLEFWNTSENKTMTLSAHEGLISALAVSTASGLVASASHDKFIKLW 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1796599 1804900 - Cp4.1LG07g02770.1 Cpe07g00273 472080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00273 670 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 495 533 - -
Cpe07g00273 670 SUPERFAMILY WD40 repeat-like 405 670 IPR036322 GO:0005515
Cpe07g00273 670 Gene3D - 359 554 IPR015943 GO:0005515
Cpe07g00273 670 MobiDBLite consensus disorder prediction 259 374 - -
Cpe07g00273 670 ProSiteProfiles Trp-Asp (WD) repeats profile. 560 600 IPR001680 GO:0005515
Cpe07g00273 670 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 294 670 - -
Cpe07g00273 670 ProSitePatterns Trp-Asp (WD) repeats signature. 471 485 IPR019775 -
Cpe07g00273 670 SMART Lish 23 55 IPR006594 GO:0005515
Cpe07g00273 670 Gene3D - 557 670 IPR015943 GO:0005515
Cpe07g00273 670 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 452 487 - -
Cpe07g00273 670 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 25 96 IPR044716 GO:0003714
Cpe07g00273 670 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 100 294 - -
Cpe07g00273 670 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 25 96 - -
Cpe07g00273 670 MobiDBLite consensus disorder prediction 348 374 - -
Cpe07g00273 670 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 639 670 - -
Cpe07g00273 670 Pfam WD domain, G-beta repeat 491 528 IPR001680 GO:0005515
Cpe07g00273 670 Pfam WD domain, G-beta repeat 448 484 IPR001680 GO:0005515
Cpe07g00273 670 Pfam WD domain, G-beta repeat 634 670 IPR001680 GO:0005515
Cpe07g00273 670 Pfam WD domain, G-beta repeat 406 441 IPR001680 GO:0005515
Cpe07g00273 670 Pfam WD domain, G-beta repeat 562 591 IPR001680 GO:0005515
Cpe07g00273 670 MobiDBLite consensus disorder prediction 291 340 - -
Cpe07g00273 670 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 410 441 - -
Cpe07g00273 670 CDD WD40 406 670 - -
Cpe07g00273 670 ProSiteProfiles Trp-Asp (WD) repeats profile. 452 487 IPR001680 GO:0005515
Cpe07g00273 670 Pfam LisH 26 51 IPR006594 GO:0005515
Cpe07g00273 670 ProSiteProfiles Trp-Asp (WD) repeats profile. 410 451 IPR001680 GO:0005515
Cpe07g00273 670 ProSiteProfiles LIS1 homology (LisH) motif profile. 23 55 IPR006594 GO:0005515
Cpe07g00273 670 ProSiteProfiles Trp-Asp (WD) repeats profile. 495 537 IPR001680 GO:0005515
Cpe07g00273 670 ProSiteProfiles Trp-Asp (WD) repeats profile. 639 670 IPR001680 GO:0005515
Cpe07g00273 670 SMART WD40_4 445 484 IPR001680 GO:0005515
Cpe07g00273 670 SMART WD40_4 403 442 IPR001680 GO:0005515
Cpe07g00273 670 SMART WD40_4 632 670 IPR001680 GO:0005515
Cpe07g00273 670 SMART WD40_4 552 591 IPR001680 GO:0005515
Cpe07g00273 670 SMART WD40_4 488 528 IPR001680 GO:0005515
Cpe07g00273 670 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 294 670 IPR044716 GO:0003714
Cpe07g00273 670 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 100 294 IPR044716 GO:0003714
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00273 - - - jre:109001794 866.685
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00273 Cpe11g00581 CCT
Cpe07g00273 Cpe11g00581 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00273 Cpe-Chr7:1796599 Cpe11g00581 Cpe-Chr11:3452582 0 dispersed
Cpe07g00268 Cpe-Chr7:1739884 Cpe07g00273 Cpe-Chr7:1796599 2.17E-40 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g426 . . . . . . . . Cmo05g00686 . . Cma05g00654 . . Sed01g1339 Cpe07g00273 . Bhi04g01022 Tan02g2682 Cmetu03g2197 . Hepe10g0285 . Lcy13g1301 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00598 Cpe11g00581 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49723 PF00400 WD40 0.00026 CL0186 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00273 Cpe_Chr07 FPKM 19.502579 22.065796 22.616877 23.250593 21.532705 21.525776 22.490612 27.748478 25.894501 28.111605