Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00275 ATGTCGACCGCCGCCGTGATCGCACATTCTAGCTCCTGGTCTCGCGCTCTCATCAATATCTCTCCCTACACTTTCTCCGCCGTCGGTATCGCCATCGCCATCGGCGTTTCCGTCCTCGGCGCCGCCTGGGGGATTTACATTACGGGAAGCAGTTTGATTGGTGCCGCGATCAAAGCTCCTCGCATTACTTCGAAGAATTTGATCAGTGTAATTTTCTGTGAAGCTGTTGCTATATACGGTGTCATTGTTGCCATCATCTTACAAACCAAGTTAGAGAGTGTTTCAGCGTCTCAGATTTATGCCCCCGAGTCTCTAAGAGCAGGATATGCAATTTTTGCATCTGGAATCATAGTTGGCTTTGCTAACCTTGTCTGCGGGCTGTGTGTGGGAATCATTGGAAGCAGCTGTGCGTTATCAGATGCCCAAAACTCCTCTCTTTTTGTGAAAATTCTTGTAATTGAGATCTTTGGCAGTGCGCTCGGGTTGTTCGGAGTGATTGTCGGGATAATTATGTCAGCTCAAGCCTCTTGGCCTGCAAAGACAGGTTGA 549 48.63 MSTAAVIAHSSSWSRALINISPYTFSAVGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPAKTG 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1822398 1823903 + Cp4.1LG07g02690.1 Cpe07g00275 472082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00275 182 Gene3D - 23 177 IPR035921 -
Cpe07g00275 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Cpe07g00275 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Cpe07g00275 182 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 4 179 - -
Cpe07g00275 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe07g00275 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe07g00275 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe07g00275 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe07g00275 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Cpe07g00275 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 179 - -
Cpe07g00275 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Cpe07g00275 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cpe07g00275 182 Pfam ATP synthase subunit C 29 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00466 Cpe-Chr2:2640372 Cpe07g00275 Cpe-Chr7:1822398 1.39E-88 dispersed
Cpe07g00275 Cpe-Chr7:1822398 Cpe07g00379 Cpe-Chr7:2450787 1.37E-21 dispersed
Cpe11g00349 Cpe-Chr11:1892479 Cpe07g00275 Cpe-Chr7:1822398 3.23E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00275 K03661 - csv:101221052 328.561