Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00288 ATGCAGGAGCCGGCGACGAGTTCCGCCGCCGCTAGCTCCTTGCCTTCGAGCAGCGAGAGGTCGTCCAGTTCGGCTCTTCACCTCGAAGTCAAAGAAGGTATGGAGAGCGATGAAGAGATCCGGAGAGTGCCGGATATGGTTGGTGAATCAGCCGGAACATCCGCCTCCGGGAGGGACACCGGTTCAGTCGCCGGTCCGGACCGGGTTCAGGCGTCTCGGGATGGTCAAAGGAAGAGAGGGAGAAGTCCGGCTGACAAAGAAAGCAAGAGACTGAAGAGATTGCTGAGGAATAGAGTATCGGCACAGCAAGCGAGGGAGAGAAAAAAGGCGTATTTGAATGATTTAGAGGTAAAGGTGAAGGATTTGGAGAAGAAGAACTTGGAGCTTGAAGAAAGGCTTTCCACTTTACAAAATGAGAATCAAATGCTTAGACAAATATTGAAGAACACAACGACAAGTCGAAGAAGTGGGGAATGA 477 51.36 MQEPATSSAAASSLPSSSERSSSSALHLEVKEGMESDEEIRRVPDMVGESAGTSASGRDTGSVAGPDRVQASRDGQRKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLNDLEVKVKDLEKKNLELEERLSTLQNENQMLRQILKNTTTSRRSGE 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1900392 1902678 + Cp4.1LG07g02790.1 Cpe07g00288 472095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00288 158 CDD bZIP_HY5-like 90 141 - -
Cpe07g00288 158 Pfam bZIP transcription factor 86 147 IPR004827 GO:0003700|GO:0006355
Cpe07g00288 158 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 92 107 IPR004827 GO:0003700|GO:0006355
Cpe07g00288 158 MobiDBLite consensus disorder prediction 30 45 - -
Cpe07g00288 158 Gene3D Single helix bin 108 149 - -
Cpe07g00288 158 MobiDBLite consensus disorder prediction 1 107 - -
Cpe07g00288 158 Coils Coil 84 146 - -
Cpe07g00288 158 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 6 155 IPR044280 GO:0000981|GO:0045944
Cpe07g00288 158 MobiDBLite consensus disorder prediction 1 24 - -
Cpe07g00288 158 MobiDBLite consensus disorder prediction 71 107 - -
Cpe07g00288 158 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 150 IPR004827 GO:0003700|GO:0006355
Cpe07g00288 158 SUPERFAMILY Leucine zipper domain 89 147 IPR046347 GO:0003700|GO:0006355
Cpe07g00288 158 SMART brlzneu 85 149 IPR004827 GO:0003700|GO:0006355
Cpe07g00288 158 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 6 155 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00288 Cpe11g00334 CCT
Cpe02g00460 Cpe07g00288 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00288 Cpe-Chr7:1900392 Cpe08g01349 Cpe-Chr8:9718011 8.12E-08 dispersed
Cpe11g00334 Cpe-Chr11:1775675 Cpe07g00288 Cpe-Chr7:1900392 1.29E-82 wgd
Cpe02g00460 Cpe-Chr2:2612716 Cpe07g00288 Cpe-Chr7:1900392 3.80E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49725 PF00170 bZIP_1 1.60E-13 CL0018 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00288 K16241 - csv:101218051 237.269