Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00289 ATGGGTAGGAACCAAATCGATGGGTTCTTCTCCGTTTCTGGTTTGGGATCTCAATGTCGATTTCAGGATGAAACTGTTCTACCTGGTGGCTTGTTCGCAAGCGTGGGACAGATGGGAGTGGGCTTCGGAGTTTCTCCAGATTCTTCCAATCCCCGCAACAATGGCGGCAATAAACTTCACATGAAGTACTTATCTTGGGTGGAGGGGTTTCGAATTCCTGGGGCTGATGAAGAGGAAGGGGTTGTGAAGAAGAAGAAGGGTGGCCTTAGATTGAGAGTTAAAGTTGCGAATCCTTCACTTAGGAGGCTAATTAGTGGGGCTGTTGCTGGGGCTGTGTCAAGGACATGCGTGGCGCCATTAGAGACCATAAGGACACATCTAATGGTGGGGAGTAGTGGAAATTCTACCACAGAAGTGTTTCATAATATCATGCAAACTGATGGGTGGAAGGGGCTGTTTAGGGGAAATTTTGTTAACGTCATTCGTGTTGCTCCTAGCAAGGCCATTGAGAGAGACGTATACGACGGGCTATTCAATGCATTCTTAAAGATACTTAGAGAAGAAGGGCCTGCTGAACTCTACAGAGGCCTTGCTCCTAGTTTGATTGGAGTAATTCCATATTCTGCAACTAATTACTTTGCATACGACACATTAAGAAAGGCCTATAGGAAAGTGTTTAAGCAAGAGAGGATTGGAAACATCGAAACCCTTTTGATTGGCTCTGCGGCTGGTGCCTTCTCGAGCAGTGTTACATTCCCGCTCGAGGTAGCACGCAAGCACATGCAGGTGGGAGCCTTAAGTGGAAGACAGGTCTATAAGAATGTCATCCATGCACTGGTTAGTATATTCGAGCAAGAAGGCATTCCAGGCTTATACAAAGGGCTAGGCCCCAGCTGTATGAAGTTAGTACCAGCTGCTGGGATTTCTTTCATGTGTTATGAGGCCTGCAAGAGGATCCTTATTGAAAACGACCAAGAAGAGTAG 984 46.54 MGRNQIDGFFSVSGLGSQCRFQDETVLPGGLFASVGQMGVGFGVSPDSSNPRNNGGNKLHMKYLSWVEGFRIPGADEEEGVVKKKKGGLRLRVKVANPSLRRLISGAVAGAVSRTCVAPLETIRTHLMVGSSGNSTTEVFHNIMQTDGWKGLFRGNFVNVIRVAPSKAIERDVYDGLFNAFLKILREEGPAELYRGLAPSLIGVIPYSATNYFAYDTLRKAYRKVFKQERIGNIETLLIGSAAGAFSSSVTFPLEVARKHMQVGALSGRQVYKNVIHALVSIFEQEGIPGLYKGLGPSCMKLVPAAGISFMCYEACKRILIENDQEE 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1901219 1904185 - Cp4.1LG07g02920.1 Cpe07g00289 472096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00289 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 97 221 IPR018108 -
Cpe07g00289 327 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 22 170 - -
Cpe07g00289 327 PANTHER SOLUTE CARRIER FAMILY 25 22 170 - -
Cpe07g00289 327 Pfam Mitochondrial carrier protein 176 224 IPR018108 -
Cpe07g00289 327 Pfam Mitochondrial carrier protein 99 175 IPR018108 -
Cpe07g00289 327 Pfam Mitochondrial carrier protein 231 323 IPR018108 -
Cpe07g00289 327 Gene3D Mitochondrial carrier domain 170 327 IPR023395 -
Cpe07g00289 327 Gene3D Mitochondrial carrier domain 80 169 IPR023395 -
Cpe07g00289 327 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 169 325 - -
Cpe07g00289 327 PANTHER SOLUTE CARRIER FAMILY 25 169 325 - -
Cpe07g00289 327 PRINTS Mitochondrial carrier protein signature 155 175 IPR002067 GO:0055085
Cpe07g00289 327 PRINTS Mitochondrial carrier protein signature 115 129 IPR002067 GO:0055085
Cpe07g00289 327 PRINTS Mitochondrial carrier protein signature 102 115 IPR002067 GO:0055085
Cpe07g00289 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 231 319 IPR018108 -
Cpe07g00289 327 SUPERFAMILY Mitochondrial carrier 98 315 IPR023395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00289 K14684 SLC25A23S; solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41 - oeu:111385364 405.216
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00289 Cpe11g00333 CCT
Cpe07g00289 Cpe11g00333 ECH
Cpe06g00346 Cpe07g00289 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00289 Cpe-Chr7:1901219 Cpe12g00528 Cpe-Chr12:5438006 5.81E-07 dispersed
Cpe11g00333 Cpe-Chr11:1772571 Cpe07g00289 Cpe-Chr7:1901219 2.90E-104 wgd
Cpe06g00346 Cpe-Chr6:1917361 Cpe07g00289 Cpe-Chr7:1901219 1.03E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g461 . . . . Bpe02g01241 . . . Cmo05g00388 Cmo12g00280 . Cma05g00389 Car09g00409 Car12g00312 . Cpe07g00289 Cpe06g00346 . . . . . . . Cla05g01747 Cam05g1860 Cec05g1872 Cco05g1935 Clacu05g1851 Cmu05g1732 Cre05g1864 Cone4ag1798 Cone7ag1706 Cone17ag1028 Cone20ag0664 Lsi04g02140 Csa03g04344 Chy04g00358 Cme03g01623 Blo17g00024 Blo18g00032 Bda01g00996 Bda13g01267 Bpe14g00576 . Bma01g01282 Bma02g00028 Sed05g1688 . Cmo09g00474 Cma09g00467 Cma12g00331 . Car05g00330 Cpe11g00333 . Bhi09g02258 Tan01g3660 Cmetu04g1828 . Hepe01g2032 Mch11g0568 . Cla08g01324 Cam08g1786 Cec08g1364 Cco08g1492 Clacu08g1480 . Cre08g1269 Lsi08g01194 . Chy03g01130 Cme04g00398
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0055188 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00289 Cpe_Chr07 FPKM 11.603826 12.820638 8.674126 10.158072 6.518987 5.577992 6.506818 22.155695 23.602118 20.940363