Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00290 ATGGCTCTTCTCATCGTCGTCGTCTTCTTCTTCACGCACGTTTCCATGGCTCGAGGAGACATTGGTACGGCCACAGCCTATGGCCCTCCATATCTACCCACCCTATGTAATGGGAATCGCGTCGATCAGTTCCCACCTGGCAACCTCTTCGTGGCGGTGAATGAAGGGCTCTGGGACAACGGTGCTGCTTGCGGTCGACGTTATAGATTAAGATGTTTGAGCGGACGAAATCACCCATGCAAGACTGATATCATCGAAGTTCAGGTGGTGAACTTCTGCCCCAAGTCCCCGTGCCCCTCTTCCTTTCTCATGTCTAAAGAGGCCTTCGCAGCTATCTCTCGCCTCCCCAATGCTAGACTCAACGTCGAATATATCGAAATATAA 384 51.56 MALLIVVVFFFTHVSMARGDIGTATAYGPPYLPTLCNGNRVDQFPPGNLFVAVNEGLWDNGAACGRRYRLRCLSGRNHPCKTDIIEVQVVNFCPKSPCPSSFLMSKEAFAAISRLPNARLNVEYIEI 127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1905544 1906079 + Cp4.1LG07g02880.1 Cpe07g00290 472097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00290 127 SUPERFAMILY Barwin-like endoglucanases 8 124 IPR036908 -
Cpe07g00290 127 Pfam Lytic transglycolase 52 124 IPR009009 -
Cpe07g00290 127 PANTHER RLPA-LIKE PROTEIN, DOUBLE-PSI BETA-BARREL-RELATED 3 126 - -
Cpe07g00290 127 Gene3D - 20 127 IPR036908 -
Cpe07g00290 127 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 3 126 - -
Cpe07g00290 127 SMART dpbb_1 51 124 IPR007112 -
Cpe07g00290 127 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 22 127 IPR007112 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00290 - - - cmax:111492001 224.557
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00278 Cpe-Chr7:1837045 Cpe07g00290 Cpe-Chr7:1905544 2.83E-29 dispersed
Cpe07g00290 Cpe-Chr7:1905544 Cpe11g00347 Cpe-Chr11:1883599 1.00E-23 dispersed
Cpe08g00031 Cpe-Chr8:203595 Cpe07g00290 Cpe-Chr7:1905544 1.63E-27 transposed
Cpe11g00332 Cpe-Chr11:1771497 Cpe07g00290 Cpe-Chr7:1905544 7.91E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g463 . . . . . . . . . Cmo12g00281 . . . Car12g00313 . Cpe07g00290 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00332 . . . . . . . . . . . . . . . . . . Lsi08g01195 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007057 2 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 0 2 1 1 1 1 2 1 1 1 1 2 3 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00290 Cpe_Chr07 FPKM 120.699387 138.320786 62.521133 65.061829 12.745033 12.885954 13.047354 15.603355 17.597395 17.370199