Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00294 ATGGGAGAAACAAGAGACAACGAATATGAGGAAGAGCTCCTCGACTATGAGGAAGAGGAAGAGAAGGCACCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTTGGAATTCACAGTTCGGGATTCAGAGACTTCCTATTGAAGCCGGAGCTTCTCCTGCAACACGAATGTATTCCCCAAGCTATCCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGTAAAACTGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTTGCTGGCCAAGTTTCTGCCCTAGTTCTGTGCCATACTAGGGAGCTTGCGTACCAGATCTGTCATGAGTTCGAAAGGTTCAGCACTTATCTTCCCGATCTGAAAGTTGCAGTCTTCTATGGTGGAGTGAATATTAAAATTCACAAAGATCTTCTGAAGAACGAATGCCCTCATATTGTTGTTGGAACACCGGGAAGGATATTGGCATTGACAAGAGATAAGGACCTTTCCCTGAAGAATGTGCGGCATTTTATCTTGGATGAATGTGACAAGATGCTTGAGTCACTTGATATGCGGAGGGATGTACAGGAAATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTTTCGGCGACACTGAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTCGATGACGAGGCAAAGTTGACATTGCATGGTCTTGTCCAGCACTACATCAAACTGAGCGAGATGGAGAAAAATCGGAAGTTGAACGACCTCCTTGATGCATTGGACTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAGTAGGGCAGCTGAGCTGGATAAGTTATTGGTGGAGTGTAATTTTCCATCTATATGTATCCATTCTGGCATGTCTCAGGAAGAGAGGTTGACTCGTTACAAGGGTTTTAAGGAAGGACATAAGCGGATTCTTGTGGCAACAGATTTGGTTGGTCGAGGAATTGACATTGAACGTGTAAACATTGTCATCAACTATGACATGCCAGATTCTGCTGATACTTACCTGCACAGGGTTGGCAGAGCTGGAAGATTTGGCACCAAAGGGCTTGCAATTACTTTTGTATCATCTGCAGCTGATTCTGATGTTCTCAACAATTGCCATCATAGATGTAGAGATCTTCAGCATAGAATATCGGCTACCTGGGTTGCCTTTGTGGTTCACATGTCATTGTGGTTCGAATCCAAATCGGACTCGAAATGGATGGAAGCCACTGCACTAGGCTTGGATGCGAGAGGGGCTTGCTCTTGA 1323 43.99 MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLLQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNCHHRCRDLQHRISATWVAFVVHMSLWFESKSDSKWMEATALGLDARGACS 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1917391 1922262 - Cp4.1LG07g02940.1 Cpe07g00294 472101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00294 440 CDD SF2_C_DEAD 250 379 - -
Cpe07g00294 440 SMART ultradead3 51 253 IPR014001 -
Cpe07g00294 440 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 64 237 IPR014001 -
Cpe07g00294 440 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 27 395 - -
Cpe07g00294 440 Pfam Helicase conserved C-terminal domain 263 370 IPR001650 -
Cpe07g00294 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 381 IPR027417 -
Cpe07g00294 440 Gene3D - 42 245 IPR027417 -
Cpe07g00294 440 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 395 - -
Cpe07g00294 440 SMART helicmild6 289 370 IPR001650 -
Cpe07g00294 440 Pfam DEAD/DEAH box helicase 60 223 IPR011545 GO:0003676|GO:0005524
Cpe07g00294 440 Gene3D - 246 405 IPR027417 -
Cpe07g00294 440 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 265 414 IPR001650 -
Cpe07g00294 440 CDD DEADc_DDX39 45 239 - -
Cpe07g00294 440 MobiDBLite consensus disorder prediction 1 22 - -
Cpe07g00294 440 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00294 Cpe11g00330 CCT
Cpe07g00294 Cpe11g00330 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00294 Cpe-Chr7:1917391 Cpe08g00529 Cpe-Chr8:3428920 5.17E-70 dispersed
Cpe11g00330 Cpe-Chr11:1758701 Cpe07g00294 Cpe-Chr7:1917391 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00294 K12812 - csv:101217346 752.281