Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00308 ATGGCTTTCCAAGTGACTGAATCTGCTTCTTTACTGGTGAAGGCTTTTATGGCTTTCCGGGACCAACTCTCTCGGGGACTTCCTCTCCATTACGGGAACCAGCCTCCGGAGGAGCAGTCGGAACGGCCGCTTGATAGCACTCTGCGCTCTATTTTATCTGATCAGCTTACTGATCACTCTCCGGCTGGCGATGGTTCTAAGTCTGAGCATCTGCTTCAGAGCACTCCGAATTGGTTGAATAGTGCGCTACTTCGGAATCAAACACCTCATTCTCAGTATTCTGGTGATTCCATGACGAGCGCTGCGGATAAGGACATCACCGACTTCCTTAATCTTCACACGACGGGTTCTAATTCTGCTGTGTCTCATCCGACCGGTCAATGGCTCTCCCGTCCGATCCTCCATCGCAATCATAGTGATGTTATTGATGAAGTTGCCGATGCTGCCGATGCTATGATTGGCGCCACCACCACTTTGTCGCGCGAATCGGATGATTTGAAGAACAATAGCTGCGGCGGGGGAGGGGAGGGTGTGAACAACAGTGACGATGTGGCGATTGAGAGCGATGGTAATGAAGGTGCTCATTGTGAAGAGGCGGCAGTGAATTGGCAGAATGCGCGGGCTAAGGCTGAAATTCTGGCGCATCCACTTTACGAGCAGCTGCTCTCTGCTCACGTTGCCTGTCTCCGGATCGCAACACCGGTGGATCAGTTGCCGAGGATAGATTCTCAGCTTGCTGAGTCTCAGAATGTGGCGGCGAAGTACTCGTCGCTGGGGCACGGTTCTCAACCCGTAGTCGGAAATGGAAAAGAGATCGATCAGTTCATGACGCATTATGTTCTATTACTTTGTTCGTTTAAAGAACAACTTCAGCAGCATGTCCGCTTCCATGCAATGGAAGCAGTGTATGCCTGCTGGGAAATTGAGCAATCTTTGCAGAGCTTGACAGGTGTTTCACCTGGTGAAGGTACGGGTGCTACCATGTCTGATGATGAGGAAGACCAGATAGATAGCGATGCTATTATGTTTGATGGATGTTTGGAGGGTCATGATGCTACGGGATTTGGTCCCCTTATCCCAACAGAGAGTGAGAAATCCTTGATGGAGAGGGGTTACAAGGAGAAAATTGTAGACATCAGGGAGGAAATTTTACGAAAGAGGAGAGCAGGTAAACTTCCTGGTGGCACTACGTCCGTCTTAAAAGCTTGGTGGCAATCACATTCAAAATGGCCATACCCTACTGAGGAAGATAAAGCAAAGTTGGTTCAGGAAACCGGTCTGCAACTGAAGCAGATAAATAACTGGTTTATCAACCAAAGGAAGAGGAATTGGCACGCCAATCCTTCAACCACAACAACCATGAAGACCAAACGCAAAAGAAGTAATGCAGGTGACACACCAGGCGACGACCATGAATAG 1419 49.19 MAFQVTESASLLVKAFMAFRDQLSRGLPLHYGNQPPEEQSERPLDSTLRSILSDQLTDHSPAGDGSKSEHLLQSTPNWLNSALLRNQTPHSQYSGDSMTSAADKDITDFLNLHTTGSNSAVSHPTGQWLSRPILHRNHSDVIDEVADAADAMIGATTTLSRESDDLKNNSCGGGGEGVNNSDDVAIESDGNEGAHCEEAAVNWQNARAKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDSQLAESQNVAAKYSSLGHGSQPVVGNGKEIDQFMTHYVLLLCSFKEQLQQHVRFHAMEAVYACWEIEQSLQSLTGVSPGEGTGATMSDDEEDQIDSDAIMFDGCLEGHDATGFGPLIPTESEKSLMERGYKEKIVDIREEILRKRRAGKLPGGTTSVLKAWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHANPSTTTTMKTKRKRSNAGDTPGDDHE 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1998675 2004228 - Cp4.1LG07g03090.1 Cpe07g00308 472115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00308 472 SMART HOX_1 385 450 IPR001356 GO:0003677
Cpe07g00308 472 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 63 462 - -
Cpe07g00308 472 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 63 462 - -
Cpe07g00308 472 Pfam KNOX1 domain 209 249 IPR005540 GO:0003677|GO:0005634
Cpe07g00308 472 MobiDBLite consensus disorder prediction 441 457 - -
Cpe07g00308 472 MobiDBLite consensus disorder prediction 458 472 - -
Cpe07g00308 472 MobiDBLite consensus disorder prediction 441 472 - -
Cpe07g00308 472 CDD homeodomain 397 445 IPR001356 GO:0003677
Cpe07g00308 472 SMART KNOX1_2 206 250 IPR005540 GO:0003677|GO:0005634
Cpe07g00308 472 Pfam KNOX2 domain 266 316 IPR005541 GO:0003677|GO:0005634
Cpe07g00308 472 SUPERFAMILY Homeodomain-like 386 448 IPR009057 -
Cpe07g00308 472 MobiDBLite consensus disorder prediction 164 191 - -
Cpe07g00308 472 ProSiteProfiles 'Homeobox' domain profile. 383 446 IPR001356 GO:0003677
Cpe07g00308 472 SMART KNOX2_2 262 317 IPR005541 GO:0003677|GO:0005634
Cpe07g00308 472 Pfam Homeobox KN domain 403 442 IPR008422 GO:0003677|GO:0006355
Cpe07g00308 472 Gene3D - 384 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00308 Cpe-Chr7:1998675 Cpe13g00185 Cpe-Chr13:1447129 2.13E-87 dispersed
Cpe11g00311 Cpe-Chr11:1683405 Cpe07g00308 Cpe-Chr7:1998675 0 wgd
Cpe02g00470 Cpe-Chr2:2662202 Cpe07g00308 Cpe-Chr7:1998675 0 wgd
Cpe06g00313 Cpe-Chr6:1740266 Cpe07g00308 Cpe-Chr7:1998675 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49726 PF03791 KNOX2 2.70E-18 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00308 - - csv:101213817 756.133