Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00325 ATGGCTGCTCTTTTGAAAGCTCTGTTTCTTTTCGTCTTCGTCTTCTTCAGCTCGTCGGAAGCCAGAGAGATCTTGGTCGGAGGCAAAACCAACGCCTGGAAAATCCCTTCTTCTCCAGCTCAATCTCTCAATCAATGGGCCGAAAGCTCCCGGTTTCGTGTCGGCGACACTCTCGTGTGGAATTACGAGGGGAAAGATTCAGTGTTGAAAGTGAGGAAGGAAGATTACGAAGCCTGCAACATTACGAACCCACAAGAGAAACTGGAGGACGGGAACGCCAAGGTGGAGCTTCACAACCCGGGTCCGATCTACTTCATCAGTGGAGTAAAGGCTCACTGCGAGCAGGGTCTTAAGCTTGTCGTCGTCGTTATGACTCCTCGTCACAGGTTCATCGGTATCTCTCCGGCGCCTTCTCCGGCGGAGATTGAGGCTCCGGCGGTTGCTCCCTCGAGTGGCGCTGCAAGTTTGAAGGTCGGGGTTTTGGCTGTCGTGGTGGGGATTTTGGGAGCTCATATGATTTAG 522 52.87 MAALLKALFLFVFVFFSSSEAREILVGGKTNAWKIPSSPAQSLNQWAESSRFRVGDTLVWNYEGKDSVLKVRKEDYEACNITNPQEKLEDGNAKVELHNPGPIYFISGVKAHCEQGLKLVVVVMTPRHRFIGISPAPSPAEIEAPAVAPSSGAASLKVGVLAVVVGILGAHMI 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2102734 2104271 + Cp4.1LG07g03160.1 Cpe07g00325 472132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00325 173 CDD OsENODL1_like 22 124 IPR041846 -
Cpe07g00325 173 SUPERFAMILY Cupredoxins 21 124 IPR008972 -
Cpe07g00325 173 PANTHER EARLY NODULIN-LIKE PROTEIN 3 7 168 - -
Cpe07g00325 173 Gene3D - 20 127 IPR008972 -
Cpe07g00325 173 ProSiteProfiles Phytocyanin domain profile. 22 125 IPR003245 GO:0009055
Cpe07g00325 173 PANTHER BLUE COPPER PROTEIN 7 168 IPR039391 GO:0009055
Cpe07g00325 173 Pfam Plastocyanin-like domain 33 116 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00325 - - - csv:101210664 224.557
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00683 Cpe-Chr6:4245417 Cpe07g00325 Cpe-Chr7:2102734 2.09E-26 dispersed
Cpe07g00325 Cpe-Chr7:2102734 Cpe12g00665 Cpe-Chr12:6443138 5.92E-23 dispersed
Cpe07g00325 Cpe-Chr7:2102734 Cpe17g00141 Cpe-Chr17:880581 7.90E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g584 . . . . Bpe02g01264 . . . Cmo05g00351 Cmo12g00319 . Cma05g00347 . Car12g00349 Sed11g1139 Cpe07g00325 . Bhi04g00052 Tan02g2764 Cmetu03g2012 . Hepe10g0215 . Lcy13g1834 . . . . . . . . . Cone17ag0978 Cone20ag0319 Lsi04g02065 . . . . . Bda01g01015 . . . . . . . . . Cma12g00366 . Car05g00293 . . . . . . . . . Cla08g01369 Cam08g1838 Cec08g1417 Cco08g1549 Clacu08g1533 . Cre08g1316 Lsi08g01251 . Chy03g01081 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe09g01150 . 12 146 Phytocyanin Superfamily AT1G48940 54.0 1.9e-37 152.9
Cpe20g00102 . 12 137 Phytocyanin Superfamily AT1G48940 57.0 2.5e-37 152.5
Cpe04g00182 . 24 126 Phytocyanin Superfamily AT3G01070 67.3 2.1e-38 156.0
Cpe04g00182 . 28 151 Phytocyanin Superfamily AT5G15350 58.9 2.2e-43 172.6
Cpe07g00325 . 2 168 Phytocyanin Superfamily AT4G31840 52.1 3.3e-42 168.7
Cpe20g00102 . 8 135 Phytocyanin Superfamily AT3G18590 57.7 6.9e-38 154.5
Cpe20g00102 . 8 135 Phytocyanin Superfamily AT3G18590 57.7 6.9e-38 154.5
Cpe09g01150 . 12 146 Phytocyanin Superfamily AT1G48940 54.0 1.9e-37 152.9
Cpe20g00102 . 12 137 Phytocyanin Superfamily AT1G48940 57.0 2.5e-37 152.5
Cpe07g00325 . 1 164 Phytocyanin Superfamily AT5G25090 53.4 9.8e-37 150.6
Cpe07g00325 . 2 168 Phytocyanin Superfamily AT4G31840 52.1 3.3e-42 168.7
Cpe04g00182 . 24 126 Phytocyanin Superfamily AT3G01070 67.3 2.1e-38 156.0
Cpe04g00182 . 28 151 Phytocyanin Superfamily AT5G15350 58.9 2.2e-43 172.6
Cpe16g00842 CCT 83 283 Phytocyanin Superfamily AT1G08500 59.4 5.7e-63 238.0
Cpe18g00130 . 32 173 Phytocyanin Superfamily AT2G27035 54.2 4.0e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010533 1 1 0 0 1 1 2 1 1 1 1 1 2 0 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00325 Cpe_Chr07 FPKM 2.773543 4.037658 2.323867 1.672336 5.030043 3.676911 3.808569 1.120769 1.502884 1.156747