Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00326 ATGGCCATTAGAAGTAAAGAGGGTGCCACCGTTATCTTATCTGGCTCATCAGGACCGCCAGTCACTTCTGTCCCAAGTCAAAATTCTGAACTGGTTCTGACACCCAATATTCCGGATATTACTGTTGAACCGCCTGAGGATGATCATCTCCGCCATGTCATTGACACTATGGCTCTTTACGTTCTGGATGGAGGTTGTGCCTTTGAACAAGCTATTATGGAGAGGGGTCGGGGAAATCCTCTCTTCAACTTCTTGTTTGAGCTTGGTTCAATAGAACATACTTACTATGTTTGGCGACTTTACTCATTTGCTCAGGGGGATACTCTTCAAAGGTGGAGAACTGAACCTTTTATCATGATAACTGGTAGTGGGAGATGGGTTCCACCGCCTCTTCCAACTGCTAAAAGCCCAGAGCTAGAGAAGGAGTCTGGTCCCACATATGCTGCTGGAAGAAGCAGACGTGCGGAGCTTGAAAGAACATTAACTGATTCACAAAGAGATGAGTTTGAGGACATGCTTCGGGCATTGACACTAGAAAGGAGTCAGATAAAGGACGCAATGGGGTTTGCATTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTTTTAACAGAATCTCTAACACTGAGGGAAACTCCTATTCCTACCAAAGTTGCACGGTTGATGCTCGTGTCTGATATCCTTCATAACAGTAGTGCTCCTGTCAAGAATGCATCTGCATACCGCACAAAGTTTGAAGCATCATTACCTGACATCATGGAGAGCTTCAATGATCTGTATCGCAGTATAACAGGGAGAATTACGGCAGAGGCCCTCAAGGAACGAGTACTGAAATTGTTGCAAGTATGGTCCGATTGGTTTCTGTTCTCAGATGCTTATGTGAATGGATTGCGAGCCACATTCCTTCGCTTAGGAAACTCGGGTGTGATCCCTTTTCATTCATTGTGTGGCGATGCCCCAGAGATTGAACGGAAGGCCAATAGTGATAATTTAGGAGATGGGGGTAAAATCAATCAAGATGCTGAATTGGCAATGGGAAAAGGAGGAGCTATGAAGGAGTTAATGAATCTTCCCTTTGGAGAATTGGAAAGAAGGTGCAGGCATAATGGATTGTCTCTTGTTGGTGGTAGAGAAATGATGGTTGCACGTTTGCTGAGCCTCGAAGAGGAAGAAAAACAGAGTGGATTTGAACTTGATGAACACTTAAAGTATAGTAATTCTCATTCTGGTAGATATTCAAGTAGCTCGAGAGAAACTAAAGTTGATCGTGATCGAGCAGAAATTTCTGGATGGAATCGTTTTGGGGATGATGATACAGATTTCCAAAGGATGGGTTCTGTGCCTTTGGCTCAAACTCTTTCCATTCCACAGCCTGAACTAAAAGGCTTCACGAAGTCGGGGAAAAATGAGCCCGTTTTGCCCATCTCTAAATGGGCGAGGGAGGATGATGAAAGTGACAATGAGCAAAAAGGAGGTACTAGAGGTCTTGGATTAAGTTACTCATCTTCTGGAAGTGAAAATGCGGGCGATGGTTCTAGTAAAGCCGATGAGATGGACATTACTACGGAGGCAAGTATTCTTATGCAACCTGATAATGGGTTGAATGAAGAGCAGAGACAAAAGTTAAGACGTGTAGAGGTGGCTTTGATCGAATATCGTGAGTCCTTGGAAGAACGGGGCATCAAAAGTGTAGAGGAAATAGAGAGGCGGGTTTCGATTTATCGAAGACAACTAGAATCTGAACATGGATTGTCAGATTCCAATGAGACTGCATTAAGGAAGAGGAGGAGGGATAGACCAGATGACAGCAATGATTCATCAAGAAAGTTGCAGCGTAGCCGGAGCCATAGCGATAGCCCAGTACCAAAGTCATTCAACCGAGACAGGGACAGGGAAAACGACGTGGACCGGGAGCAAGAAAGATCAAGAGACAGAGATGGCGAGAAGAGTGGAAGCAGAGAGAGGGACGATCATGACCGAGATAGGGGTAAAGATAGAGACAGGGATAGGAGAAGACGAGCAAAATAA 2031 44.76 MAIRSKEGATVILSGSSGPPVTSVPSQNSELVLTPNIPDITVEPPEDDHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSIEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWVPPPLPTAKSPELEKESGPTYAAGRSRRAELERTLTDSQRDEFEDMLRALTLERSQIKDAMGFALDNADAAGEIVEVLTESLTLRETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEASLPDIMESFNDLYRSITGRITAEALKERVLKLLQVWSDWFLFSDAYVNGLRATFLRLGNSGVIPFHSLCGDAPEIERKANSDNLGDGGKINQDAELAMGKGGAMKELMNLPFGELERRCRHNGLSLVGGREMMVARLLSLEEEEKQSGFELDEHLKYSNSHSGRYSSSSRETKVDRDRAEISGWNRFGDDDTDFQRMGSVPLAQTLSIPQPELKGFTKSGKNEPVLPISKWAREDDESDNEQKGGTRGLGLSYSSSGSENAGDGSSKADEMDITTEASILMQPDNGLNEEQRQKLRRVEVALIEYRESLEERGIKSVEEIERRVSIYRRQLESEHGLSDSNETALRKRRRDRPDDSNDSSRKLQRSRSHSDSPVPKSFNRDRDRENDVDREQERSRDRDGEKSGSRERDDHDRDRGKDRDRDRRRRAK 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2109211 2121348 + Cp4.1LG07g03170.1 Cpe07g00326 472133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00326 676 SUPERFAMILY ENTH/VHS domain 163 302 IPR008942 -
Cpe07g00326 676 MobiDBLite consensus disorder prediction 476 491 - -
Cpe07g00326 676 MobiDBLite consensus disorder prediction 493 511 - -
Cpe07g00326 676 Pfam Surp module 51 103 IPR000061 GO:0003723|GO:0006396
Cpe07g00326 676 MobiDBLite consensus disorder prediction 576 676 - -
Cpe07g00326 676 SMART cwf21_2 535 584 IPR013170 -
Cpe07g00326 676 SMART surpneu2 51 105 IPR000061 GO:0003723|GO:0006396
Cpe07g00326 676 SUPERFAMILY Surp module (SWAP domain) 26 108 IPR035967 GO:0003723|GO:0006396
Cpe07g00326 676 PANTHER - 1 671 - -
Cpe07g00326 676 MobiDBLite consensus disorder prediction 1 26 - -
Cpe07g00326 676 Gene3D Surp module 39 108 IPR035967 GO:0003723|GO:0006396
Cpe07g00326 676 ProSiteProfiles CID domain profile. 161 306 IPR006569 -
Cpe07g00326 676 Pfam CID domain 168 296 IPR006569 -
Cpe07g00326 676 MobiDBLite consensus disorder prediction 576 669 - -
Cpe07g00326 676 ProSiteProfiles SURP motif repeat profile. 53 96 IPR000061 GO:0003723|GO:0006396
Cpe07g00326 676 Coils Coil 536 556 - -
Cpe07g00326 676 Coils Coil 166 186 - -
Cpe07g00326 676 Gene3D - 535 586 - -
Cpe07g00326 676 Gene3D - 162 306 IPR008942 -
Cpe07g00326 676 MobiDBLite consensus disorder prediction 10 26 - -
Cpe07g00326 676 MobiDBLite consensus disorder prediction 129 152 - -
Cpe07g00326 676 MobiDBLite consensus disorder prediction 451 540 - -
Cpe07g00326 676 SMART 558neu5 168 303 IPR006569 -
Cpe07g00326 676 Pfam cwf21 domain 535 582 IPR013170 -
Cpe07g00326 676 PANTHER RNA PROCESSING PROTEIN LD23810P 1 671 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00326 K12842 SR140; U2-associated protein SR140 - csv:101209274 1146.34
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00326 Cpe11g00290 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00290 Cpe-Chr11:1566810 Cpe07g00326 Cpe-Chr7:2109211 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g594 . . . Bda03g00108 . . Bma04g00100 . Cmo05g00348 Cmo12g00321 . Cma05g00344 . Car12g00350 Sed11g1135 Cpe07g00326 . Bhi04g00058 Tan02g2773 Cmetu03g2041 . . . Lcy13g1839 . . . . . . . . . . . . . . Cme03g01569 . . . . . Bpe04g00092 . . . . . . Cma12g00368 . Car05g00290 Cpe11g00290 . . . . . . . . Cla08g01372 Cam08g1841 Cec08g1419 Cco08g1552 Clacu08g1536 . Cre08g1319 Lsi08g01255 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005029 1 2 1 1 1 1 2 1 1 3 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00326 Cpe_Chr07 FPKM 3.42285 2.921373 0.976643 1.013192 0.713118 1.80039 1.673703 0.970375 1.487234 0.710611