Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00334 ATGGCTTCAAAGCTTTGTGATTCCTGTAAGGTGGCCGCTGCCACTCTCTTCTGCCGAGCTGACTCTGCCTTTCTTTGCCTTGGCTGCGACTCCAAAGTCCATGCAGCCAACAAGCTTGCTTCCCGCCATGCGCGCGTATGGCTTTGTGAAGTCTGTGAGCAAGCTCCTGCTCATGTTACCTGTAAGGCCGACGCTGCTGCTCTCTGCATCACTTGCGACCACGATATCCACTCTGCCAATCCCCTCGCTCGCCGTCATGAGCGAGTTCCTGTCACGCCTTTCTACGACTCTTCCAACTCCGACAACTCTCTCGCCGTTAAGCCTGCTGCTGCAATCAACTTCCTAGATGATCGTTATTTCTCCAATGTCAACACTGACGCCGCCGAAGAGGCCGAAGCTGCTTCCTGGCTTCTTCCAAACCCTAACCCTAAGCCAATCGAAAATACAGATCTGAACTCGGGGAAGTTAGAGTTTCTAGAAATGGATCCTTACTTAGATCTGGATTACGACCGCGTAGATCCGAAATTAGAAGTGCGAGAGCATAACAGCTCCGCCGCCGATGGAGTCGTTCCGGTTCAGAGCAAAGGCGTCGATCTCTCATCGGTAAACGATCGTAGCTTCGGCATCGACTTCCCCTGCGCTAAATCGTTCCCGTACAGTTACAATCCTCAGTCAATCAGTCACAGTGTATCATCCTCGTCGATCGAGGTCGGAGTCGTTCCGGAGGGGAACACGATAACGGAGATATCGAATCCGTACACGAAACCGTCGACGGAATCGACTGTTCCACCGCTGCAAATCTCGCCGGCAGATCGAGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACGATTCGATACGCATCTCGTAAGGCCTACGCCGAGACGAGACCACGAATCAAGGGACGATTCGCCAAACGGACGGATATCGAGTTGGAAGCCGACCGAGTGAGTGGATACGGCGTCGTTCCGTCGTTCTAA 1002 52.89 MASKLCDSCKVAAATLFCRADSAFLCLGCDSKVHAANKLASRHARVWLCEVCEQAPAHVTCKADAAALCITCDHDIHSANPLARRHERVPVTPFYDSSNSDNSLAVKPAAAINFLDDRYFSNVNTDAAEEAEAASWLLPNPNPKPIENTDLNSGKLEFLEMDPYLDLDYDRVDPKLEVREHNSSAADGVVPVQSKGVDLSSVNDRSFGIDFPCAKSFPYSYNPQSISHSVSSSSIEVGVVPEGNTITEISNPYTKPSTESTVPPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELEADRVSGYGVVPSF 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2164576 2167022 - Cp4.1LG07g03410.1 Cpe07g00334 472141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00334 333 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Cpe07g00334 333 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 333 IPR045281 GO:0009909
Cpe07g00334 333 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Cpe07g00334 333 Pfam CCT motif 272 314 IPR010402 GO:0005515
Cpe07g00334 333 CDD Bbox1_BBX-like 5 48 - -
Cpe07g00334 333 ProSiteProfiles CCT domain profile. 272 314 IPR010402 GO:0005515
Cpe07g00334 333 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Cpe07g00334 333 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 333 - -
Cpe07g00334 333 CDD Bbox1_BBX-like 48 91 - -
Cpe07g00334 333 SMART bboxneu5 49 91 IPR000315 GO:0008270
Cpe07g00334 333 SMART bboxneu5 1 48 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00334 Cpe11g00283 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01383 Cpe-Chr2:12135075 Cpe07g00334 Cpe-Chr7:2164576 4.48E-08 dispersed
Cpe03g00957 Cpe-Chr3:7378010 Cpe07g00334 Cpe-Chr7:2164576 2.50E-08 dispersed
Cpe04g01287 Cpe-Chr4:10630461 Cpe07g00334 Cpe-Chr7:2164576 4.50E-105 dispersed
Cpe07g00334 Cpe-Chr7:2164576 Cpe18g00605 Cpe-Chr18:6389288 2.92E-104 dispersed
Cpe11g00283 Cpe-Chr11:1535861 Cpe07g00334 Cpe-Chr7:2164576 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49729 PF00643 zf-B_box 4.30E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00334 - - csv:101208063 579.711