Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00336 ATGGTCTTGGCGGCGGCGATGGCGGCAGCGGAGGAGGAGAAGACGGTGGCGGCAGTGGAAGTGAAGGTGGGCGTGGTTTTGAATCCTAATGCTTTTGGGAAGATGGGTATGGCCTGCATCTCAATGGCTCTCTCTGATTTCTACGCTTCTCGGAAAACCTCGATGCAAGCCAACTTCGTGATCGACGTCGGAGCCAAAGCACACGTACCCATCATCTCATTTTCCGCCACACGACCATCCCTAACATCCCACCGCAGTTCATTCTTCTTCCGAGCAGCCCAAGACGACGCTTCTCAAGTTAAAGCAATTGGTTCCATCGTAAAAGCCTACAAATGGCGACGAGTCGTCCCAATCTACGTCGACGACATGTTCGGCGACGGCATCATCCCATACCTAATCGACGCCCTACAAAACGTCAACACACACGTACCCTACCAAAGCATCATATCACCTACCGCCACCGACGACCAAATCATCGGAGAACTTTACAAGCTCATGACCATGCAAACAAGAGTGTTTATAGTACACATGTTACACGGCCTCGCCTCACGCATATTCATCAAAGCCAAACAAATTGGAATGATGAATAAAGGGTACGTTTGGATTGTTACAAATAGTATCACAAACGAGCTGGATTCAATAAATCATTCGATTTTTGAATCAATGCAAGGAGTAATTGGAATAAAAACTTACGTCCCAAGAACTCAAAAGCTCGAAGCTTTTGAAGATTTATGGCGGAAGAGATTTCTAAAGTATTATCCAACAATCGAACACATCCCGGAGCTCGACGTGTTCGGATTATGGGCTTATGATGCAGCTTGGGCGTTGGCGATCGCCGTGGAAGAGGCCGGCATCGACAGCCTTCGATATAGCCCGGCGAATGTCACGGCGTTGAAAATGAACTCATCGAACTATTTACACAATTTGGGTGTCAATCAAAATGGTGTAAGGCTTCGTGATCGGCTCTCAAATGTTACGTTTGATGGGTTGGCCGGAAAATTTGTGCTTAGAAATGGGCAATTGGAGTCGGCGGTTATGGAGATAGTGAATGTTATTGGTAATGGGAGGAGAAATGTGGGGTTTTGGTCGCCGGAGAGTGGGCTGACGAGGGTATTGGAGGGTTTGGGAGGAGGAGGAGGTGGGTTGAAATCGGTTATTTGGCCGGGAGATCCTGGCCACCGGCCAAAAGGGTGGGAGGTTTCGACGGCGGAGAGGAAGTTGAGAGTGGTGGTTCCGGTGAAGGATGGGTTTTGGGAGTTTGTGAGTATAGTTCATGATGCTAAGACGAATACAACGAAAGTGAGTGGGTATTGTATTGAAGTATTCAAAGCTGTTATTGAAGCGTTGCCTTATGCTGTTGGTTATGAGCTGATTCCCTTTCATAAAACCGCTGCGGAGCCTGGTGGTACCTATAATGACTTGGTCAAAATACATCGACTACACACTACCCTTTGCAGAATCGGGCGTATCACTAGTGGTACCAATAAAGAGCGTGAAGAACACCAACGCATGGGTATTCATACAGCCATTAAAAGGGCGCCTATGGTCCCTCACAGGCGGCTTCTTCCTCATCATGGCACTCGTCAGAGCGACCGGATGAGAGAGATCGAGAACGCATGGTTCAAGAAAGTGAGAGAATGTTCAGTTTCTGAAGCCTCTCAATTGTCTTCAACACGTTTGAGCGTGGACAGTTTCTGGGCACTTTTCGTGATCGTCGCAAGTTTTGTATCATTTGTTATATGGTCAAATTTCTGTACGACGAGCGAGGGCTGTGGTGGTATACAAATGCTCCAAAGCGGCAAAGATTCCACCAAGTGGGGCGCAAGTTCATGGATAGAGATGCAAGAGCTTACCGGCTGCAACGAAGGGCATTTAGAAATGGTGTTCGTGTTCATCCCGATCATCACCCTCCAGCTAATTGAAACAGATCGCTTGGTGGGGAGAGGAAAGGGTTTGAGAGGGGGTTTTGGGGTGGTGGTGATTGTTGTTTTTCTTAACATGTTAGTCATGGCGGCGGCGACCACGGAGATGGTGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGCGGCAAAAGTGAAAGTGAAGGTGGGTGTGGTCTTGGATTTGAATCTTGTTGTTGGGCAGATGGGGTTGAGCTGTGTTTCAATGGCTCTAGCTGATTTGTATTCTTCTCGGAGTTATTACAAGACTAGAGTGACTCTTAGCACCATTGACTCCAATGACACCGTTGAAGAGGAAGTACAAGCCATAATAGGCCCAACAAGCTCCATGCAAGCCAACTTCATAATCAACATAGGAGACAAAGCACAAGTACCCATCATCTCCTACTCCGCCACACGCCCATCCCTCACATCCCAACGCAGCTCCTTCTTCTTCCGCATCGCCCAAAACGATTCCTCTCAAGTCAAAGCCATTGGAGCCATAATCAAAGCTTTCAAATGGCGTCAAGTCATCCCCATCTACACCGACAACGAGTTCGGCAACGGCATCGTCCCTTACCTCATCGACGCACTACAAGAAGCCGACGCAGACGTACCTTACCAAAGCCTCATCTCCCCGACAGCCACCGACACCCAAATCACCAACGAGCTACACAAATTAAAAAACATGCCGACAAGAGTGTTCGTAGTACACATGTTAACACGCCTCGCTTCAAGATTCTTCATGAAAGTTCAAGAATTTGGAATGATGAATCGTGGGTATGTTTGGATTATCACTGATTCAATTGCAAATGAATTGGATTTAATCGAGCCATTAGTTTATGAAGCTTTGCAGGGCGTTGTTGGAATTAGAACTTATGTCCCAAGAACGAAAAGGCTTAACTTGTTGAAACGTGATTGGCGGAAGAGATTCCGGCGGTATTACCCGACCGTGGAGGATATTCCGGAGGTGGACGTTTATGGGTTGTGGGCTTATGATGCTGCTTGGGCTTTGGCCACCGCCGTGGAACTCGCCGGCACCGACAACCTCCGATACACCGCCGCCAAAATTAACTCATCGAATTATTTATTTAACGTTGGGGTTAATCAAAATGGTCCGAGGTTGCGTGAGGCCTTGTCGGATGTGACGTTCATGGGGTTGGCTGGTGAATTTAGTCTCATAAATGGGCAATTGCAATCGACCCTTTTTGAGATTGTGAATGTTATTGGTAATGGGAGGAGAAATGTGGGGTTTTGGTCGCCGGAGACTGGGTTGACGAGGAAGCTGGTTGATTCCGGCGGTGCGAAGGGGTTGCGATCGATTATTTGGCCGGGGGAGCCGGTTGTTACGCCGAAAGGATGGGAGGTTCCGACGAATGGGAGGAAGTTGAGAATTGGGGTTCCGGTGAAGGATGGATTTTGGGAGTTTGTGAAGCTGGTAAGGGATTTTGAAACGAATGTAACGATTGGTGTTGAAGGATATTGCATTGATGTGTTTAAGGCTGTGATTGAGAAGCTGCCTTATAAGGTTGATTATGAGTTCGTTCCTGCTGAGAAATCTAATTCTGTCCCTGGTGGTAGCTACAATGAGTCAACCTACATAGACTACACATTACCATTCACAGAATCCGGAGTGGCCATGGTGGTGCCAATGAAGACCGAGAAGAACACCAATGCATGGGTGTTCTTAAAGCCACTAACATGGAAGCTATGGGCGCTCACAGCCGGCTTCTTCCTCTTCATAGCACTTGTTGTTTGGATCCTAGAACATAGAGTCAATGAAGAGTTCCGTGGATCTTCATTGGATCAAATCTGCACCAGCCTCTGGTACTCATTCTCCACCATGGGATTTCCGATAGGTTCGCCTTTAGTACCGGACATCTCGAGAAAAATCTTAGAGGTGACGGAAGGCGAAAGAATGAAAGAGATCGAAACCAAATGGTTCAAAAATGTGGAAGAATGTACAGCTTCAAAAGTGGCAGAATTATCTTCCACCCGCTTGAGCATCAACAGCTTCTGGGGACTTTTCCTCGTCACCGGCGTCGTTTCCCTCTCCTCGGTCGTTGCTTATATCGGCAAATTTCTCTACGACGAACAGCGCGTGTGGCGAAACAACGTCGAGCCTTCGATCTGGAGAGTATTCTGCGCGTTGATCCGCAAGTTCATGAAGAGAGATCCAACAGCTCACCCGCTAAGGCGAAGGGCATCCATGAATGATGTTCCTGTCTTAGCCAGAAGACGCAGTTTT 4170 48.01 MVLAAAMAAAEEEKTVAAVEVKVGVVLNPNAFGKMGMACISMALSDFYASRKTSMQANFVIDVGAKAHVPIISFSATRPSLTSHRSSFFFRAAQDDASQVKAIGSIVKAYKWRRVVPIYVDDMFGDGIIPYLIDALQNVNTHVPYQSIISPTATDDQIIGELYKLMTMQTRVFIVHMLHGLASRIFIKAKQIGMMNKGYVWIVTNSITNELDSINHSIFESMQGVIGIKTYVPRTQKLEAFEDLWRKRFLKYYPTIEHIPELDVFGLWAYDAAWALAIAVEEAGIDSLRYSPANVTALKMNSSNYLHNLGVNQNGVRLRDRLSNVTFDGLAGKFVLRNGQLESAVMEIVNVIGNGRRNVGFWSPESGLTRVLEGLGGGGGGLKSVIWPGDPGHRPKGWEVSTAERKLRVVVPVKDGFWEFVSIVHDAKTNTTKVSGYCIEVFKAVIEALPYAVGYELIPFHKTAAEPGGTYNDLVKIHRLHTTLCRIGRITSGTNKEREEHQRMGIHTAIKRAPMVPHRRLLPHHGTRQSDRMREIENAWFKKVRECSVSEASQLSSTRLSVDSFWALFVIVASFVSFVIWSNFCTTSEGCGGIQMLQSGKDSTKWGASSWIEMQELTGCNEGHLEMVFVFIPIITLQLIETDRLVGRGKGLRGGFGVVVIVVFLNMLVMAAATTEMVAEEEEEEEEEVAAKVKVKVGVVLDLNLVVGQMGLSCVSMALADLYSSRSYYKTRVTLSTIDSNDTVEEEVQAIIGPTSSMQANFIINIGDKAQVPIISYSATRPSLTSQRSSFFFRIAQNDSSQVKAIGAIIKAFKWRQVIPIYTDNEFGNGIVPYLIDALQEADADVPYQSLISPTATDTQITNELHKLKNMPTRVFVVHMLTRLASRFFMKVQEFGMMNRGYVWIITDSIANELDLIEPLVYEALQGVVGIRTYVPRTKRLNLLKRDWRKRFRRYYPTVEDIPEVDVYGLWAYDAAWALATAVELAGTDNLRYTAAKINSSNYLFNVGVNQNGPRLREALSDVTFMGLAGEFSLINGQLQSTLFEIVNVIGNGRRNVGFWSPETGLTRKLVDSGGAKGLRSIIWPGEPVVTPKGWEVPTNGRKLRIGVPVKDGFWEFVKLVRDFETNVTIGVEGYCIDVFKAVIEKLPYKVDYEFVPAEKSNSVPGGSYNESTYIDYTLPFTESGVAMVVPMKTEKNTNAWVFLKPLTWKLWALTAGFFLFIALVVWILEHRVNEEFRGSSLDQICTSLWYSFSTMGFPIGSPLVPDISRKILEVTEGERMKEIETKWFKNVEECTASKVAELSSTRLSINSFWGLFLVTGVVSLSSVVAYIGKFLYDEQRVWRNNVEPSIWRVFCALIRKFMKRDPTAHPLRRRASMNDVPVLARRRSF 1390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2175457 2190707 + Cp4.1LG07g03340.1 Cpe07g00336 472143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00336 1390 PANTHER GLUTAMATE RECEPTOR 2.9 695 1258 - -
Cpe07g00336 1390 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 52 476 - -
Cpe07g00336 1390 PANTHER GLUTAMATE RECEPTOR 2.9 1257 1362 - -
Cpe07g00336 1390 PANTHER GLUTAMATE RECEPTOR 2.9 529 583 - -
Cpe07g00336 1390 CDD PBP1_GABAb_receptor_plant 701 1070 IPR044440 -
Cpe07g00336 1390 Gene3D - 997 1102 - -
Cpe07g00336 1390 Gene3D - 295 407 - -
Cpe07g00336 1390 Gene3D - 800 967 - -
Cpe07g00336 1390 Gene3D - 97 264 - -
Cpe07g00336 1390 Gene3D - 1103 1173 - -
Cpe07g00336 1390 SUPERFAMILY Periplasmic binding protein-like II 385 475 - -
Cpe07g00336 1390 SUPERFAMILY Periplasmic binding protein-like I 694 1086 IPR028082 -
Cpe07g00336 1390 CDD PBP1_GABAb_receptor_plant 22 372 IPR044440 -
Cpe07g00336 1390 Gene3D - 408 549 - -
Cpe07g00336 1390 Gene3D - 1195 1331 - -
Cpe07g00336 1390 SUPERFAMILY Periplasmic binding protein-like I 53 398 IPR028082 -
Cpe07g00336 1390 SMART GluR_14 1103 1291 IPR001320 GO:0015276|GO:0016020
Cpe07g00336 1390 Pfam Receptor family ligand binding region 734 1051 IPR001828 -
Cpe07g00336 1390 Pfam Receptor family ligand binding region 53 353 IPR001828 -
Cpe07g00336 1390 SUPERFAMILY Periplasmic binding protein-like II 1081 1290 - -
Cpe07g00336 1390 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1257 1362 - -
Cpe07g00336 1390 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 695 1258 - -
Cpe07g00336 1390 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 529 583 - -
Cpe07g00336 1390 PANTHER GLUTAMATE RECEPTOR 2.9 52 476 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00336 K05387 GRIP; glutamate receptor, ionotropic, plant - csv:101203794 823.157
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00336 Cpe-Chr7:2175457 Cpe07g00580 Cpe-Chr7:3892223 1.11E-123 dispersed
Cpe07g00336 Cpe-Chr7:2175457 Cpe07g00575 Cpe-Chr7:3817467 7.37E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g631 . . . . . . . . . Cmo12g00332 . . . . . Cpe07g00336 . Bhi04g00081 Tan02g2792 . . Hepe10g0197 . Lcy13g1866 . . . . . . . . . . . . . . Cme03g01551 . . Bda01g01359 . . . . . . . . . Cma12g00380 . . . . . . . . . . . . . . . . . . . . Chy03g01064 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00336 Cpe_Chr07 FPKM 1.895455 0.909524 0.0 0.264364 1.082285 1.482847 1.546535 0.946071 0.607723 0.702068