Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00344 ATGCCTTTACTCCACTTCACAATAGCACTCAAGCTCTTCCTTTGTCTTCAACTAGCTAGTGCTACTATAAACATTCCTCCCGGTTACTCGGTCCCCGCGGTTTTCGTGTTCGGGGATTCGATCGTCGATACTGGCAACAATAACAATCTCATCACTCAAGCTAAGTGCAACTATCCGCCGTACGGTAGGAATTTTCTCGATCAACAGGCAACTGGGCGATTTTCCAATGGCAAAGTTCCCTCCGACCTTCTAGTTGATGCGTTGGGTATCAAAGAGTTTTTACCACCGTATGCTAACCCGAGTCTACGGCCCGAAGACCTAATTACGGGTGTCAATTTTGCTTCTGGTGGTGCTGGATTTGATCCTCTGACCTCTCAATTAGCGCCAGCAATATCACTTGAAGATCAATTAGGCATGTTTAGGGAATACTCAAAGAAGCTAGAAGAACTAGTGGGAGTAGCAAGAGCAAAGTTCATAATAGCCAATGGCTTGTTCATGGTGGTGGCGGGAAGCAACGACATTGCCAACACATTTTATCTTGCAAGAATAAGGCAAATTCATTTCAATATCGACTCGTACACTGATTTCATGGCTCGGTATGCTTCCGCTTATGCTAAGTTACGTGGCTTGGACCAATGTTATCGGTTTCTTTTTGTTTGTTTTTTGTTAGTTGATGCGTTGGGTATCAAAGAGTTTTTACCACCGTATGCTAACCCGAGTCTACGGCCCGAAGACCTAATTACGGGTGTCAATTTTGCTTCTGGTGGTGCTGGATTTGATCCTCTGACCTCTCAATTAGCGCCAGCAATATCACTTGAAGATCAATTAGGCATGTTTAGGGAATACTCAAAGAAGCTAGAAGAACTAGTGGGAGTAGCAAGAGCAAAGTTCATAATAGCCAATGGCTTGTTCATGGTGGTGGCGGGAAGCAACGACATAGCCAACACATTTTATCTTGCAAGAATAAGGCAAATTCATTTCAATATCGACTCGTACACTGATTTCATGGCTCGGTATGCTTCCGCTTTTGCTAAGGAATTGTACGCAGCCGGTGGGCGGAGAATCGGATTCTTCGGGGCACCGCCGTTAGGGTGTGTGCCGTCGCAAAGAACCTTGGCTGGCGGGATTGAAAGGGCGTGCGTGAATGAGTACAACGCTGCTGCAGAGCTCTTCAATGGAAAATTGCACATTGCTTTGAATCAACTTCAAACGTCACTGCCTAACAGCAAACTAGTTTACGTGGATATTTACAATCCTCTTCTTGACGTCATCCAAAACTATCGTAAATATGGGTTTGAAGTTGCGGATAGAGGGTGTTGTGGAACTGGGAAGATCGAGGTGACGTTTCTTTGTAACAAATTCGTGAAGACCTGCAACGATCCGAACAAGTTCGTGTTTTGGGACAGTTTTCATCCAACCGAAGCTACATACAGCTACCTCGTCGCTCCGATCATTCAAAAATATATTTCTAATTTCCTATAG 1482 44.67 MPLLHFTIALKLFLCLQLASATINIPPGYSVPAVFVFGDSIVDTGNNNNLITQAKCNYPPYGRNFLDQQATGRFSNGKVPSDLLVDALGIKEFLPPYANPSLRPEDLITGVNFASGGAGFDPLTSQLAPAISLEDQLGMFREYSKKLEELVGVARAKFIIANGLFMVVAGSNDIANTFYLARIRQIHFNIDSYTDFMARYASAYAKLRGLDQCYRFLFVCFLLVDALGIKEFLPPYANPSLRPEDLITGVNFASGGAGFDPLTSQLAPAISLEDQLGMFREYSKKLEELVGVARAKFIIANGLFMVVAGSNDIANTFYLARIRQIHFNIDSYTDFMARYASAFAKELYAAGGRRIGFFGAPPLGCVPSQRTLAGGIERACVNEYNAAAELFNGKLHIALNQLQTSLPNSKLVYVDIYNPLLDVIQNYRKYGFEVADRGCCGTGKIEVTFLCNKFVKTCNDPNKFVFWDSFHPTEATYSYLVAPIIQKYISNFL 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2236455 2239882 + Cp4.1LG07g03330.1 Cpe07g00344 472151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00344 493 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 222 490 - -
Cpe07g00344 493 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 12 206 - -
Cpe07g00344 493 SUPERFAMILY SGNH hydrolase 303 485 - -
Cpe07g00344 493 Pfam GDSL-like Lipase/Acylhydrolase 34 207 IPR001087 GO:0016788
Cpe07g00344 493 Pfam GDSL-like Lipase/Acylhydrolase 226 481 IPR001087 GO:0016788
Cpe07g00344 493 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 34 45 IPR008265 GO:0006629|GO:0016298
Cpe07g00344 493 Gene3D SGNH hydrolase 191 489 IPR036514 -
Cpe07g00344 493 CDD SGNH_plant_lipase_like 32 488 IPR035669 -
Cpe07g00344 493 PANTHER GDSL ESTERASE/LIPASE EXL3 12 206 - -
Cpe07g00344 493 PANTHER GDSL ESTERASE/LIPASE EXL3 222 490 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00344 - - - cmax:111496255 518.464
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00344 Cpe-Chr7:2236455 Cpe19g00873 Cpe-Chr19:6410869 6.71E-46 dispersed
Cpe11g00272 Cpe-Chr11:1463381 Cpe07g00344 Cpe-Chr7:2236455 3.14E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1159 . . . . . . . . . . . . . . . . Cpe07g00344 . . . . . . . Cla08g01400 Cam08g1880 Cec08g1457 Cco08g1590 Clacu08g1572 . Cre08g1355 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001408 2 2 3 2 2 2 3 1 2 2 1 3 2 2 2 2 2 5 3 1 2 4 4 2 3 1 2 2 2 7 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00344 Cpe_Chr07 FPKM 8.779009 10.59126 12.282576 13.744946 8.624506 9.802258 11.00181 12.419739 11.396954 13.01722