Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00350 CATTCTTTCGCATTCGCTTTCTCTCTCGTTCTCTGCAACTTCCTCTTTGCTGCCGATGCTTTTAGTGCATCGGGATGGTATCCCGCTCATGCTACGTTCTACGGCGGTAGCGATGCGTCGGGGACAATGGGAGGAGCTTGTGGGTATGGGAACTTGTACGACACGGGTTACGGGACAAGCACGGCAGCGCTGAGCACCGCGCTGTTCAACGACGGAGCATCCTGCGGGCAGTGCATCAAGATCACGTGCGATTACAAGACCGACCCCCGTTGGTGCGTCAAAGGGGCGTCGGTGACCGTAACAGCCACCAATTTTTGCCCACCAAACTTCGCTCTCCCCAACAACAACGGCGGA 354 56.78 HSFAFAFSLVLCNFLFAADAFSASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTSTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGG 118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2266900 2268151 - Cp4.1LG07g03560.1 Cpe07g00350 472157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00350 118 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Cpe07g00350 118 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Cpe07g00350 118 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Cpe07g00350 118 SUPERFAMILY Barwin-like endoglucanases 11 114 IPR036908 -
Cpe07g00350 118 PANTHER EXPANSIN 4 118 - -
Cpe07g00350 118 SMART dpbb_1 61 118 IPR007112 -
Cpe07g00350 118 Pfam Lytic transglycolase 61 108 IPR009009 -
Cpe07g00350 118 PANTHER EXPANSIN-A15 4 118 IPR002963 GO:0009664
Cpe07g00350 118 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Cpe07g00350 118 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Cpe07g00350 118 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Cpe07g00350 118 Gene3D - 14 117 IPR036908 -
Cpe07g00350 118 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 118 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00350 Cpe-Chr7:2266900 Cpe01g01474 Cpe-Chr1:8805796 5.67E-45 dispersed
Cpe07g00350 Cpe-Chr7:2266900 Cpe11g00269 Cpe-Chr11:1454386 1.17E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00350 - - csv:101216569 216.083