Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00352 ATGAGGAGGATTAATGGAGTTCGCGTACTCAGCCGGTTTGTAAGCGGTGAGGCCAACACCGCCACTGTCACCGCTGATCGGCGGCTACTCCATCCATCGGCGGTTCACAGAACGTTCATTGGATCTGATATTCGGTGTTTCTCGCAAGCGAAGAATCCATTTGGCTTGTATTGTCCTTCTTTTGCTCGGAATGTTGCAGGGAATGGTCGGTGCTTCTCTGTGGCCTCTTCATCTTCGGTTCATGATGTGGTTAATGACCTACCTCGTTTGTCGTTCGCACCCAAGGATGTGGTTCTCTATCAATACGAGGCTTGCCCGTTCTGCAACAAAGTTAAAGCATTCTTGGATTATTACAATGTTCCTTATAAAGTCGTGGAGGTGAATCCCATATTCAAAAAGGAGATTAAGTGGTCTGAATACAAGAAGGTTCCAATTCTGATGGTTGATGGTGTTCAAATGGTGGATTCTACAGGTTCAGTCAAATCTAGTTCAACTTCCAGAGAACTGTCGGTCGCCATGAGGAGGATTAATGGAGTTCGCGTACTCAGCCGGTTTGTAAGCGGTGAGGCCAACACCGCCACTGTCACCGCTGATCGGCGGCTACTCCATCCATCGGCGGTTCACAGAACGTTCATTGGATCTGATATTCGGTGTTTCTCGCAAGCGAAGAATCCATTTGGCTTGTATTGTCATTCTTTTGCTCGGAATGTTGCAGGGAATGGTCGGTGCTTCTCTGTGGCCTCTTCATCTTCGGTTCATGATGTGGTTAATGACCTACCTCGTTTGTCGTTCGCACCCAAGGATGTGGTTCTCTATCAATACGAGGCTTGCCCGTTCTGCAACAAAGTTAAAGCATTCTTGGATTATTACAATGTTCCTTATAAAGTTGTGGAGGTGAATCCCATATTCAAAAAGGAGATTAAGTGGTCTGAATACAAGAAGGTTCCAATTCTGATGGTTGATGGTGTTCAAATGGTGGATTCTACAGATATAATTGATAAGTTGTACAAAAGAATTCATCCAGAGAATTCTACCTCGGACTCAGAGGAGGAGAGGAAGTGGCTTGGATGGGTGGACAATCACCTGGTGCACGTTTTATCCCCGAACATTTACAGAAATTACAAGGAGGCTCTCGAGTCTTTCAACTACATAACTACACATGGAAATTTTAGTTTCACTCAAAGGATAATAGCTAAGTATGGCGGGGCTACAGCCATGTATTTTGTTTCCAAGAAATTGAAAGAAAAACATAACATCACTGATGAACGAAAAGCTTTATATGGAGCTGCAGAAACATGGGTGGAAGCACTGAAAGACCGTCAGTTTCTTGGTATGCTTAACTTCATTCACGATTCTGTTCAGTTATTTAGGTTCNAAGACCGTCAGTTTCTTGGTGGACCAAATCCTAATTTAGCTGATCTTGCTGTCTTTGGCGTCTTGAGACCAATCCGACACCTTCAATCTGGAATAGATATGGTAGAAAATACAAGAGTTGGCGAATGGTATTCTAGAATGGAGGATGCTGTAGGAGAGTCTGCAAGGATCGTCTCTTGA 1554 44.21 MRRINGVRVLSRFVSGEANTATVTADRRLLHPSAVHRTFIGSDIRCFSQAKNPFGLYCPSFARNVAGNGRCFSVASSSSVHDVVNDLPRLSFAPKDVVLYQYEACPFCNKVKAFLDYYNVPYKVVEVNPIFKKEIKWSEYKKVPILMVDGVQMVDSTGSVKSSSTSRELSVAMRRINGVRVLSRFVSGEANTATVTADRRLLHPSAVHRTFIGSDIRCFSQAKNPFGLYCHSFARNVAGNGRCFSVASSSSVHDVVNDLPRLSFAPKDVVLYQYEACPFCNKVKAFLDYYNVPYKVVEVNPIFKKEIKWSEYKKVPILMVDGVQMVDSTDIIDKLYKRIHPENSTSDSEEERKWLGWVDNHLVHVLSPNIYRNYKEALESFNYITTHGNFSFTQRIIAKYGGATAMYFVSKKLKEKHNITDERKALYGAAETWVEALKDRQFLGMLNFIHDSVQLFRFXDRQFLGGPNPNLADLAVFGVLRPIRHLQSGIDMVENTRVGEWYSRMEDAVGESARIVS 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2282500 2286544 - Cp4.1LG07g03540.1 Cpe07g00352 472159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00352 517 ProSiteProfiles Glutaredoxin domain profile. 85 180 - -
Cpe07g00352 517 Pfam Glutathione S-transferase, N-terminal domain 271 338 IPR004045 -
Cpe07g00352 517 PANTHER GLUTATHIONE S-TRANSFERASE FAMILY PROTEIN 173 447 - -
Cpe07g00352 517 ProSitePatterns Glutaredoxin active site. 271 287 IPR011767 -
Cpe07g00352 517 CDD GST_C_mPGES2 348 511 IPR034335 -
Cpe07g00352 517 PANTHER MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 1 158 - -
Cpe07g00352 517 PANTHER MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 173 447 - -
Cpe07g00352 517 PANTHER GLUTATHIONE S-TRANSFERASE FAMILY PROTEIN 459 515 - -
Cpe07g00352 517 SUPERFAMILY Thioredoxin-like 96 157 IPR036249 -
Cpe07g00352 517 PANTHER MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 459 515 - -
Cpe07g00352 517 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 267 343 IPR004045 -
Cpe07g00352 517 ProSiteProfiles Glutaredoxin domain profile. 257 354 - -
Cpe07g00352 517 Pfam Glutaredoxin 97 151 IPR002109 -
Cpe07g00352 517 PANTHER GLUTATHIONE S-TRANSFERASE FAMILY PROTEIN 1 158 - -
Cpe07g00352 517 SUPERFAMILY Thioredoxin-like 268 362 IPR036249 -
Cpe07g00352 517 SFLD Prostaglandin E synthase like.1 259 444 IPR034334 GO:0050220
Cpe07g00352 517 Gene3D - 344 515 - -
Cpe07g00352 517 ProSitePatterns Glutaredoxin active site. 99 115 IPR011767 -
Cpe07g00352 517 Gene3D Glutaredoxin 90 166 - -
Cpe07g00352 517 Gene3D Glutaredoxin 262 340 - -
Cpe07g00352 517 SFLD Prostaglandin E synthase like 259 444 - -
Cpe07g00352 517 SUPERFAMILY GST C-terminal domain-like 337 509 IPR036282 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00352 K05309 PTGES2; microsomal prostaglandin-E synthase 2 [EC:5.3.99.3] - csv:101215364 516.538
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00352 Cpe11g00268 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01366 Cpe-Chr4:11110105 Cpe07g00352 Cpe-Chr7:2282500 1.12E-19 dispersed
Cpe07g00352 Cpe-Chr7:2282500 Cpe18g00675 Cpe-Chr18:6788612 3.34E-31 dispersed
Cpe11g00268 Cpe-Chr11:1444007 Cpe07g00352 Cpe-Chr7:2282500 1.27E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1151 . . . . . . . . Cmo05g00323 Cmo12g00348 . . . Car12g00375 Sed08g0406 . Cpe07g00352 Bhi04g00121 Tan02g2832 Cmetu03g2049 . Hepe10g0170 . Lcy13g1896 Cla08g01407 Cam08g1887 Cec08g1464 Cco08g1597 Clacu08g1579 . Cre08g1362 . . . . . . . . . . Bda08g01209 . . Bpe05g00149 . Bma05g00181 . . . Cma12g00397 Cma05g00320 Car05g00267 . Cpe11g00268 . . . . . . . . . . . . . . . Lsi08g01303 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001449 3 2 2 3 3 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 4 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00352 Cpe_Chr07 FPKM 1.279771 0.0 2.117453 1.692825 0.0 0.0 1.061461 0.0 1.281494 1.959076