Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00357 ATGAGGAAGTGGACGATTGCTTCTGCTCTTCTCCTTCTTTGTTTTCTCTCTCTCGTACCGGATCAAGGTCCTAGATTTCATGCCAAGGCCGATGGTGACGCCGACGAGGTTGTAGATCCACCGAAGGTTGAGGAAAAAATCGGGGCCGTTCCACATGGTCTCTCTACTGATTCTGATGTTGTCAAGAGGGAGTCGGAGTCTATCTCGAAGAGATCTCTTCGCAGCAGCGCGGAGAAATTTGAGTTCCAAGCTGAGGTGTCTCGTCTCATGGACATCATTATCAATTCCTTATATAGTAACAAAGACATTTTCCTCCGAGAATTGATCTCCAACGCTTCTGATGCGTTGGATAAGATTAGGTTCCTCTCCCTGACTGATAAAGAGATATTGGGTGAGGGCGACAACTCAAAGCTTGAGATTCAAATTAAGTTGGACAAGGAGAACAAAGTCCTCTCGATTCGCGACAGAGGTATTGGTATGACAAAAGAGGATTTAGTTAAGAACTTGGGAACCATCGCAAAATCTGGAACTTCAGCATTCGTGGAAAAAATGCAAACAAGCGGAGATCTCAATCTTATTGGGCAATTTGGAGTGGGTTTCTACTCCGTGTACCTTGTAGCTGACTACGTTGAAGTGATTAGCAAACACAATGATGACAAACAACATGTGTGGGAATCCAAGGCTGATGGAGCATTCGCAATCTCTGAAGATACGTGGAACGAACCTTTAGGCCGTGGAACTGAAATTAGACTACACCTTAGAGATGAAGCTCAAGAATACTTGGAGGAGGGCAAACTGAAAGATTTGGTGAAGAGATATTCAGAATTTATCAACTTCCCTATTTATATTTGGGGAAGCAAAGAGATTGATGTCGAGGTTCCTGCAGATGAGGATGAATCCAACGACGGAGAAGAATCACCCGAAGACAAGAGTGAAGAAGAAGATGATGCAGAAAAGAGTGAAGATGAAGATTCTGAGAAGCCAAAGACAAAGAAAGTCAAAGAAACAACTTATGAATGGGAGCTTTTGAATGATGTGAAAGCCATATGGCTGCGGAGTCCTAAGGAGGTGACAGAAGAGGAGTATACTAAATTCTACCATTCTCTTGCTAAGGATTTTAGTGATGATAAGCCTATGGCATGGAGTCACTTTAATGCTGAAGGTGATGTTGAGTTCAAAGCTGTTCTGTTTGTACCTCCTAAGGCTCCTCATGATCTATACGAGAGCTATTACAACAGCAAAAAATCCAACTTGAAGTTGTATGTTCGAAGGGTTTTCATCTCAGACGAGTTCGATGAGCTCCTGCCGAAGTATTTGAGCTTTCTGCTGATGCTCAAAAGAGTAGCGGTGATGATGATGAGAAGAAGGGCCAATATACTCGATTCTGGAACGAGTTTGGTAAATCAATCAAACTGGGTATTATTGAGGATGCAACTAACAGAAACCGTCTTGCAAAACTGCTCCGATTCGAGAGACCCAGTGGATGAGTACTTGATGCAATATCTCATGGATTACGAAGACAAAAAATTCCAAAACGTATCAAAGGAGGGTCTCAAGCTCGGCAAAGACTCAAAGGACAAGGAGCTCAAGGAATCCTTCAAAGATCTTACTAAGTGGTGGAAGACTCACCTTTCTTTCGACAATGTTGATGATGTCAAAGTTTCAAATCGATTGGACAACACACCTTGCGTGGTTGTGACATCAAAGTATGGATGGAGCGCTAACATGGAAAGGATCATGCAGTCTCAAACGCTATCAGATGCTAACAAGCAAGCATACATGCGCGGTAAGAGGGTACTCGAAATCAACCCGAGGCACCCGATCATCAAGGATCTTCGAGAGAAAATAGTCAAGGATCCAGAGGATGAGGGCGCAAAGAAGGCAGCAAAACTGATGTACCAAACAGCTCTTCTAGAAAGTGGGTTTATTCTCAGTGACCCCAAGGACTTTGCCGCCCAAATCTACGACACGGTGAAGACTAGCTTAGACATCAGTCCCGACGCAGCCGTTGAGGAGGAAGATGAAGTAGAGGTCGAGGCCGAAACCGCCTCGAAGGAATCCGAAGACAAGTCCGAAACTGAAGCAGAAGACCAGTCCGTAAAGGACGAGTTGTAG 2115 44.16 MRKWTIASALLLLCFLSLVPDQGPRFHAKADGDADEVVDPPKVEEKIGAVPHGLSTDSDVVKRESESISKRSLRSSAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEILGEGDNSKLEIQIKLDKENKVLSIRDRGIGMTKEDLVKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQHVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAQEYLEEGKLKDLVKRYSEFINFPIYIWGSKEIDVEVPADEDESNDGEESPEDKSEEEDDAEKSEDEDSEKPKTKKVKETTYEWELLNDVKAIWLRSPKEVTEEEYTKFYHSLAKDFSDDKPMAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNSKKSNLKLYVRRVFISDEFDELLPKYLSFLLMLKRVAVMMMRRRANILDSGTSLVNQSNWVLLRMQLTETVLQNCSDSRDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDSKDKELKESFKDLTKWWKTHLSFDNVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDANKQAYMRGKRVLEINPRHPIIKDLREKIVKDPEDEGAKKAAKLMYQTALLESGFILSDPKDFAAQIYDTVKTSLDISPDAAVEEEDEVEVEAETASKESEDKSETEAEDQSVKDEL 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2304753 2309600 - Cp4.1LG07g03570.1 Cpe07g00357 472164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00357 704 Gene3D - 345 483 - -
Cpe07g00357 704 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 78 287 IPR036890 -
Cpe07g00357 704 Pfam Hsp90 protein 259 442 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cpe07g00357 704 Pfam Hsp90 protein 492 688 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cpe07g00357 704 MobiDBLite consensus disorder prediction 683 704 - -
Cpe07g00357 704 MobiDBLite consensus disorder prediction 294 332 - -
Cpe07g00357 704 SMART HKATPase_4 100 257 IPR003594 -
Cpe07g00357 704 ProSitePatterns Heat shock hsp90 proteins family signature. 98 107 IPR019805 GO:0005524|GO:0006457|GO:0051082
Cpe07g00357 704 Gene3D - 65 300 IPR036890 -
Cpe07g00357 704 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 492 696 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cpe07g00357 704 MobiDBLite consensus disorder prediction 665 704 - -
Cpe07g00357 704 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 20 466 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cpe07g00357 704 PANTHER BNAA08G14800D PROTEIN 492 696 - -
Cpe07g00357 704 PANTHER BNAA08G14800D PROTEIN 20 466 - -
Cpe07g00357 704 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 101 256 IPR003594 -
Cpe07g00357 704 MobiDBLite consensus disorder prediction 667 682 - -
Cpe07g00357 704 MobiDBLite consensus disorder prediction 294 321 - -
Cpe07g00357 704 PIRSF HSP90_HTPG 54 444 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cpe07g00357 704 PIRSF HSP90_HTPG 490 703 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cpe07g00357 704 PRINTS 90kDa heat shock protein signature 245 262 IPR020575 -
Cpe07g00357 704 PRINTS 90kDa heat shock protein signature 263 281 IPR020575 -
Cpe07g00357 704 PRINTS 90kDa heat shock protein signature 168 185 IPR020575 -
Cpe07g00357 704 PRINTS 90kDa heat shock protein signature 78 98 IPR020575 -
Cpe07g00357 704 PRINTS 90kDa heat shock protein signature 193 215 IPR020575 -
Cpe07g00357 704 PRINTS 90kDa heat shock protein signature 150 167 IPR020575 -
Cpe07g00357 704 PRINTS 90kDa heat shock protein signature 99 121 IPR020575 -
Cpe07g00357 704 CDD HATPase_Hsp90-like 87 277 - -
Cpe07g00357 704 Gene3D - 520 662 IPR037196 -
Cpe07g00357 704 SUPERFAMILY Ribosomal protein S5 domain 2-like 346 516 IPR020568 -
Cpe07g00357 704 SUPERFAMILY HSP90 C-terminal domain 535 657 IPR037196 -
Cpe07g00357 704 Gene3D - 490 519 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00357 K09487 HSP90B, TRA1; heat shock protein 90kDa beta - csv:101203607 796.193
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00357 Cpe11g00262 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00357 Cpe-Chr7:2304753 Cpe13g00465 Cpe-Chr13:4887606 4.26E-40 dispersed
Cpe07g00357 Cpe-Chr7:2304753 Cpe07g00359 Cpe-Chr7:2311375 4.30E-37 proximal
Cpe11g00262 Cpe-Chr11:1418617 Cpe07g00357 Cpe-Chr7:2304753 6.33E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1132 . . . . . . . . Cmo05g00316 Cmo12g00353 . . . Car12g00379 . . Cpe07g00357 Bhi04g02197 . . . . . . . . . . . . . Cone4ag1980 Cone7ag1897 . . . . . . . Blo18g00775 . Bda01g01534 Bpe02g01732 . Bma01g00723 . . . . . Cma05g00315 Car05g00261 . Cpe11g00262 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006598 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 3 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00357 Cpe_Chr07 FPKM 1.3552 1.495152 1.80189 1.6178 3.405028 3.51038 3.695882 2.740056 3.00158 2.798462