Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00363 ATGGTCCACTTTTCCATTTCCTTCAAACAAGACACCATGAGAGAAATCCTTCACGTTCAAGGTGGCCAATGCGGCAACCAAATCGGATCCAAGTTCTGGGAAGTGATCTGCGATGAGCACGGCATCGACGCCACTGGAAAATACAACGGCGATCCTTCTTCTGATCTTCAATTGGAGAGGATCAATGTCTATTACAATGAGGCTTCTGGCGGCAGATACGTTCCCAGGGCTGTTCTCATGGATCTTGAGCCCGGTACCATGGATAGTATCAGATCCGGTCCCTACGGTCAGATCTTTCGCCCCGATAATTTTGTTTTTGGCCAGTCCGGTGCTGGAAATAATTGGGCCAAGGGACATTATACTGAAGGAGCGGAGTTGATTGATTCCGTTCTTGATGTTGTTCGTAAGGAGGCCGAGAACTGTGATTGCTTGCAAGGCTTTCAGGTTTGTCACTCTCTTGGAGGAGGCACTGGTTCTGGCATGGGAACCCTATTGATATCGAAGATTAGAGAAGAATATCCGGATAGGATGATGCTCACCTTCTCGGTTTTCCCTTCTCCCAAGGTCTCAGACACGGTTGTGGAACCATATAATGCCACTCTTTCAGTGCATCAGCTGGTTGAGAATGCTGATGAATGCATGGTTCTTGATAATGAAGCTCTTTATGACATTTGCTTCAGAACCTTAAAGCTCAGCACTCCTAGCTTCGGTGACCTGAACCATTTGATCTCTGCAACCATGAGTGGAGTAACATGTTGCTTGAGATTCCCCGGTCAATTGAACTCAGACCTGAGGAAATTGGCAGTGAATCTGATCCCATTTCCCCGTCTTCACTTCTTCATGGTTGGATTTGCTCCTCTGACCTCCCGTGGCTCTCAGCAGTACATCTCCCTCACCGTCCCAGAGCTGACCCAGCAAATGTGGGACGCCAAGAACATGATGTGCGCCGCCGACCCCCGCCACGGCCGCTACCTGACAGCCTCTGCAATGTTCAGAGGAAGAATGAGCACCAAAGAAGTAGACGAACAGATGATCAATGTACAGAACAAAAACTCATCATACTTCGTGGAATGGATTCCCAACAACGTGAAATCAAGCGTTTGTGACATCCCTCCAAAGGGTCTGAAAATGGCGTCCACATTCGTCGGAAACTCGACCTCCATTCAGGAGATGTTCAGAAGGGTGAGCGAGCAGTTCACGGCCATGTTCAGGCGGAAGGCTTTTCTGCATTGGTACACAGGGGAAGGAATGGATGAAATGGAGTTTACAGAGGCGGAGAGTAATATGAATGATTTGGTTGCTGAGTATCAGCAATATCAGGACGCAACGGTTGATGATGAAGCTGATTTTGAGGATCATGAAGAAGATTATGCCGAGCAGTAG 1383 48.16 MVHFSISFKQDTMREILHVQGGQCGNQIGSKFWEVICDEHGIDATGKYNGDPSSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGRMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATVDDEADFEDHEEDYAEQ 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2343891 2347626 + Cp4.1LG07g03620.1 Cpe07g00363 472170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00363 460 Pfam Tubulin/FtsZ family, GTPase domain 15 225 IPR003008 GO:0005525
Cpe07g00363 460 SMART Tubulin_C_4 260 397 IPR018316 -
Cpe07g00363 460 Pfam Tubulin C-terminal domain 275 396 IPR018316 -
Cpe07g00363 460 Coils Coil 422 442 - -
Cpe07g00363 460 Gene3D Helix hairpin bin 388 444 IPR023123 -
Cpe07g00363 460 SUPERFAMILY Tubulin nucleotide-binding domain-like 13 257 IPR036525 -
Cpe07g00363 460 PRINTS Beta-tubulin signature 426 444 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Beta-tubulin signature 325 343 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Beta-tubulin signature 391 402 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Beta-tubulin signature 343 357 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Beta-tubulin signature 279 295 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Beta-tubulin signature 55 72 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Beta-tubulin signature 166 178 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Beta-tubulin signature 361 384 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Beta-tubulin signature 226 238 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Beta-tubulin signature 122 140 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Beta-tubulin signature 102 113 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Beta-tubulin signature 244 253 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Beta-tubulin signature 259 272 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cpe07g00363 460 SUPERFAMILY Tubulin C-terminal domain-like 258 443 IPR008280 -
Cpe07g00363 460 Gene3D - 277 387 IPR037103 -
Cpe07g00363 460 CDD beta_tubulin 14 440 - -
Cpe07g00363 460 PANTHER TUBULIN BETA-1 CHAIN-RELATED 13 455 - -
Cpe07g00363 460 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 154 160 IPR017975 GO:0005525|GO:0005874|GO:0007017
Cpe07g00363 460 PANTHER TUBULIN 13 455 IPR000217 GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Tubulin signature 384 412 IPR000217 GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Tubulin signature 107 118 IPR000217 GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Tubulin signature 204 224 IPR000217 GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Tubulin signature 22 42 IPR000217 GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Tubulin signature 146 164 IPR000217 GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Tubulin signature 190 203 IPR000217 GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Tubulin signature 120 144 IPR000217 GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Tubulin signature 65 84 IPR000217 GO:0005874|GO:0007017
Cpe07g00363 460 PRINTS Tubulin signature 165 186 IPR000217 GO:0005874|GO:0007017
Cpe07g00363 460 Gene3D Tubulin/FtsZ, GTPase domain 13 276 IPR036525 -
Cpe07g00363 460 SMART Tubulin_4 61 258 IPR003008 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00363 K07375 TUBB; tubulin beta - csv:101204817 899.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00363 Cpe-Chr7:2343891 Cpe20g00573 Cpe-Chr20:3425948 1.01E-28 dispersed
Cpe19g00300 Cpe-Chr19:2628553 Cpe07g00363 Cpe-Chr7:2343891 8.83E-44 dispersed
Cpe19g00707 Cpe-Chr19:5536410 Cpe07g00363 Cpe-Chr7:2343891 3.76E-126 dispersed
Cpe03g01764 Cpe-Chr3:13320490 Cpe07g00363 Cpe-Chr7:2343891 1.00E-77 transposed
Cpe11g00258 Cpe-Chr11:1393631 Cpe07g00363 Cpe-Chr7:2343891 1.31E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1117 . . Bda01g00482 . Bpe02g00346 . Bma04g00249 . . . . . . . Sed08g2609 . Cpe07g00363 Bhi04g00145 Tan02g2079 Cmetu03g2170 . Hepe10g0157 . Lcy13g1909 Cla08g01419 Cam08g1899 Cec08g1475 Cco08g1608 Clacu08g1590 . Cre08g1374 . . . . . . . Cme03g01875 Blo17g00745 . . Bda01g01531 Bpe02g01727 . . . . . . Cma12g00406 . . . . . . . . . . . . . . . . . . . Lsi08g01314 . Chy03g01381 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000127 7 8 7 13 9 7 3 7 7 7 7 7 11 7 7 12 6 15 3 7 7 7 6 8 1 6 8 9 9 2 220
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00363 Cpe_Chr07 FPKM 7.502038 9.422828 6.853189 6.445802 15.717089 16.094446 14.892924 1.030497 0.862865 0.786954