Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00370 ATGTTGAACGCCGTCGAAGATCTCCTCCTCCGTCACGGACACTCCGATTTCCGATCACATCTCCTTCCTTCTCACTCTCACCATCGCGGCGACATGTCCTTGTCTTCGTCTTCTGCTTCTTCTTCTCTTGCTCAACCTATTCCTCAGTGTTTCCGTCAGTATCATCGATCTTCTCCGCCGTCGGATCAATCCAACGCTTGCGACGGTCGTCTTGCTCTCGATGCACATTCTACAGTTGCTATGCTCGACTTGAAACGGACATATGATATTAATGACTCTGAGGCTTTGGCTAGCAAACGAGCTGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTCTTGTGAACCAGTATCTAATGCAACTGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCCAGGACTAAAAAATCTACAGATGAGAATCTTGATGGTCCTAATTTATCTACTAACGGTCGGTACGACAGCTCTTTAGGCTTCTTGACGAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATCTAAATAAAACGGCAGACATATTAAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTTGAAGGGATAGGGCTTATAGAAAAAACCACCACGAATCACATACGTTGGAAGGGAGGCGTGAGGCATGACGCTCAAGAGCTCAACGATCAAGTTGGTAGATTTAAGGCTGAAGTTAAGAGTTTATATGCAGATGAACGCAGACTTGATGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGAAAATCACAGAAAGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATAAAAATCACAGAAAGAATCTTTTTATGACAGAAGAAGATATCTTGCAGATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCCCAGGCTAGCTATATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAAAAGCACCACTGGGCCGATTGATTTGTACCTCTTG 1062 42.28 MLNAVEDLLLRHGHSDFRSHLLPSHSHHRGDMSLSSSSASSSLAQPIPQCFRQYHRSSPPSDQSNACDGRLALDAHSTVAMLDLKRTYDINDSEALASKRAVASEQRMRSNDSSCEPVSNATEKQNKKLKLQKNSKSRTKKSTDENLDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADILKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGVRHDAQELNDQVGRFKAEVKSLYADERRLDELIRMKQELLRNLEENENHRKMKQELLRNLEENKNHRKNLFMTEEDILQIPCFKNQTLIAVKAPQASYIEVPDPDEEACFSERQCRLIIKSTTGPIDLYLL 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2375874 2379041 + Cp4.1LG07g03640.1 Cpe07g00370 472177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00370 354 Gene3D - 228 354 - -
Cpe07g00370 354 SUPERFAMILY E2F-DP heterodimerization region 271 353 IPR037241 -
Cpe07g00370 354 SUPERFAMILY E2F-DP heterodimerization region 234 275 IPR037241 -
Cpe07g00370 354 CDD E2F_DD 233 354 IPR032198 GO:0046983
Cpe07g00370 354 Coils Coil 228 289 - -
Cpe07g00370 354 MobiDBLite consensus disorder prediction 107 125 - -
Cpe07g00370 354 PANTHER TRANSCRIPTION FACTOR E2F 22 274 IPR015633 GO:0000978|GO:0006357
Cpe07g00370 354 PANTHER TRANSCRIPTION FACTOR E2F 275 354 IPR015633 GO:0000978|GO:0006357
Cpe07g00370 354 SMART E2F_TDP_2 157 222 IPR003316 GO:0005667|GO:0006355
Cpe07g00370 354 Pfam E2F/DP family winged-helix DNA-binding domain 159 222 IPR003316 GO:0005667|GO:0006355
Cpe07g00370 354 PANTHER TRANSCRIPTION FACTOR E2FC 22 274 - -
Cpe07g00370 354 PANTHER TRANSCRIPTION FACTOR E2FC 275 354 - -
Cpe07g00370 354 Pfam E2F transcription factor CC-MB domain 239 353 IPR032198 GO:0046983
Cpe07g00370 354 SUPERFAMILY Winged helix DNA-binding domain 157 220 IPR036390 -
Cpe07g00370 354 MobiDBLite consensus disorder prediction 21 42 - -
Cpe07g00370 354 Gene3D - 152 224 IPR036388 -
Cpe07g00370 354 MobiDBLite consensus disorder prediction 101 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00370 K06620 E2F3; transcription factor E2F3 - csv:101211469 510.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00370 Cpe11g00250 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00370 Cpe-Chr7:2375874 Cpe16g00820 Cpe-Chr16:7906566 8.21E-64 dispersed
Cpe11g00250 Cpe-Chr11:1356006 Cpe07g00370 Cpe-Chr7:2375874 2.32E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe09g01047 CCT,CST 3 375 E2F-DP Transcription Factor Family AT3G48160 55.0 4.5e-103 372.1
Cpe20g00223 CCT 3 200 E2F-DP Transcription Factor Family AT3G48160 61.3 1.4e-59 227.6
Cpe20g00223 CCT 21 200 E2F-DP Transcription Factor Family AT3G01330 54.4 6.8e-47 185.3
Cpe01g00344 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.3e-59 227.3
Cpe05g00446 . 21 424 E2F-DP Transcription Factor Family AT2G36010 52.8 1.6e-110 397.1
Cpe10g00310 CCT,ECH 45 476 E2F-DP Transcription Factor Family AT2G36010 53.0 3.5e-110 396.0
Cpe19g00497 CCT,ECH 41 480 E2F-DP Transcription Factor Family AT2G36010 52.2 1.7e-109 393.7
Cpe05g00398 CCT,ECH 3 371 E2F-DP Transcription Factor Family AT2G36010 54.7 3.5e-102 369.4
Cpe05g00446 . 24 431 E2F-DP Transcription Factor Family AT5G22220 53.7 1.8e-103 373.6
Cpe05g00398 CCT,ECH 33 378 E2F-DP Transcription Factor Family AT5G22220 59.3 8.6e-98 354.8
Cpe07g00370 CCT 157 354 E2F-DP Transcription Factor Family AT5G22220 54.0 2.5e-49 193.7
Cpe11g00250 CCT 156 411 E2F-DP Transcription Factor Family AT1G47870 53.7 3.3e-66 249.6
Cpe05g00398 CCT,ECH 77 345 E2F-DP Transcription Factor Family AT1G47870 51.7 1.9e-61 233.8
Cpe07g00370 CCT 153 354 E2F-DP Transcription Factor Family AT1G47870 59.4 7.3e-58 221.9
Cpe01g00344 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.3e-59 227.3
Cpe05g00446 . 24 431 E2F-DP Transcription Factor Family AT5G22220 53.7 1.8e-103 373.6
Cpe05g00398 CCT,ECH 33 378 E2F-DP Transcription Factor Family AT5G22220 59.3 8.6e-98 354.8
Cpe07g00370 CCT 157 354 E2F-DP Transcription Factor Family AT5G22220 54.0 2.5e-49 193.7
Cpe05g00446 . 21 424 E2F-DP Transcription Factor Family AT2G36010 52.8 1.6e-110 397.1
Cpe10g00310 CCT,ECH 45 476 E2F-DP Transcription Factor Family AT2G36010 53.0 3.5e-110 396.0
Cpe19g00497 CCT,ECH 41 480 E2F-DP Transcription Factor Family AT2G36010 52.2 1.7e-109 393.7
Cpe05g00398 CCT,ECH 3 371 E2F-DP Transcription Factor Family AT2G36010 54.7 3.5e-102 369.4
Cpe11g00250 CCT 156 411 E2F-DP Transcription Factor Family AT1G47870 53.7 3.3e-66 249.6
Cpe05g00398 CCT,ECH 77 345 E2F-DP Transcription Factor Family AT1G47870 51.7 1.9e-61 233.8
Cpe07g00370 CCT 153 354 E2F-DP Transcription Factor Family AT1G47870 59.4 7.3e-58 221.9
Cpe20g00223 CCT 21 200 E2F-DP Transcription Factor Family AT3G01330 54.4 6.8e-47 185.3
Cpe09g01047 CCT,CST 3 375 E2F-DP Transcription Factor Family AT3G48160 55.0 4.5e-103 372.1
Cpe20g00223 CCT 3 200 E2F-DP Transcription Factor Family AT3G48160 61.3 1.4e-59 227.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49730 PF16421 E2F_CC-MB 1.90E-23 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00370 Cpe_Chr07 FPKM 15.123263 17.419325 7.307798 6.358148 12.855145 11.717199 12.069522 5.809881 5.841433 4.669527