Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe07g00370 | ATGTTGAACGCCGTCGAAGATCTCCTCCTCCGTCACGGACACTCCGATTTCCGATCACATCTCCTTCCTTCTCACTCTCACCATCGCGGCGACATGTCCTTGTCTTCGTCTTCTGCTTCTTCTTCTCTTGCTCAACCTATTCCTCAGTGTTTCCGTCAGTATCATCGATCTTCTCCGCCGTCGGATCAATCCAACGCTTGCGACGGTCGTCTTGCTCTCGATGCACATTCTACAGTTGCTATGCTCGACTTGAAACGGACATATGATATTAATGACTCTGAGGCTTTGGCTAGCAAACGAGCTGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTCTTGTGAACCAGTATCTAATGCAACTGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCCAGGACTAAAAAATCTACAGATGAGAATCTTGATGGTCCTAATTTATCTACTAACGGTCGGTACGACAGCTCTTTAGGCTTCTTGACGAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATCTAAATAAAACGGCAGACATATTAAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTTGAAGGGATAGGGCTTATAGAAAAAACCACCACGAATCACATACGTTGGAAGGGAGGCGTGAGGCATGACGCTCAAGAGCTCAACGATCAAGTTGGTAGATTTAAGGCTGAAGTTAAGAGTTTATATGCAGATGAACGCAGACTTGATGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGAAAATCACAGAAAGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATAAAAATCACAGAAAGAATCTTTTTATGACAGAAGAAGATATCTTGCAGATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCCCAGGCTAGCTATATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAAAAGCACCACTGGGCCGATTGATTTGTACCTCTTG | 1062 | 42.28 | MLNAVEDLLLRHGHSDFRSHLLPSHSHHRGDMSLSSSSASSSLAQPIPQCFRQYHRSSPPSDQSNACDGRLALDAHSTVAMLDLKRTYDINDSEALASKRAVASEQRMRSNDSSCEPVSNATEKQNKKLKLQKNSKSRTKKSTDENLDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADILKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGVRHDAQELNDQVGRFKAEVKSLYADERRLDELIRMKQELLRNLEENENHRKMKQELLRNLEENKNHRKNLFMTEEDILQIPCFKNQTLIAVKAPQASYIEVPDPDEEACFSERQCRLIIKSTTGPIDLYLL | 354 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2375874 | 2379041 | + | Cp4.1LG07g03640.1 | Cpe07g00370 | 472177 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe07g00370 | 354 | Gene3D | - | 228 | 354 | - | - | |
Cpe07g00370 | 354 | SUPERFAMILY | E2F-DP heterodimerization region | 271 | 353 | IPR037241 | - | |
Cpe07g00370 | 354 | SUPERFAMILY | E2F-DP heterodimerization region | 234 | 275 | IPR037241 | - | |
Cpe07g00370 | 354 | CDD | E2F_DD | 233 | 354 | IPR032198 | GO:0046983 | |
Cpe07g00370 | 354 | Coils | Coil | 228 | 289 | - | - | |
Cpe07g00370 | 354 | MobiDBLite | consensus disorder prediction | 107 | 125 | - | - | |
Cpe07g00370 | 354 | PANTHER | TRANSCRIPTION FACTOR E2F | 22 | 274 | IPR015633 | GO:0000978|GO:0006357 | |
Cpe07g00370 | 354 | PANTHER | TRANSCRIPTION FACTOR E2F | 275 | 354 | IPR015633 | GO:0000978|GO:0006357 | |
Cpe07g00370 | 354 | SMART | E2F_TDP_2 | 157 | 222 | IPR003316 | GO:0005667|GO:0006355 | |
Cpe07g00370 | 354 | Pfam | E2F/DP family winged-helix DNA-binding domain | 159 | 222 | IPR003316 | GO:0005667|GO:0006355 | |
Cpe07g00370 | 354 | PANTHER | TRANSCRIPTION FACTOR E2FC | 22 | 274 | - | - | |
Cpe07g00370 | 354 | PANTHER | TRANSCRIPTION FACTOR E2FC | 275 | 354 | - | - | |
Cpe07g00370 | 354 | Pfam | E2F transcription factor CC-MB domain | 239 | 353 | IPR032198 | GO:0046983 | |
Cpe07g00370 | 354 | SUPERFAMILY | Winged helix DNA-binding domain | 157 | 220 | IPR036390 | - | |
Cpe07g00370 | 354 | MobiDBLite | consensus disorder prediction | 21 | 42 | - | - | |
Cpe07g00370 | 354 | Gene3D | - | 152 | 224 | IPR036388 | - | |
Cpe07g00370 | 354 | MobiDBLite | consensus disorder prediction | 101 | 154 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe07g00370 | Cpe11g00250 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe07g00370 | Cpe-Chr7:2375874 | Cpe16g00820 | Cpe-Chr16:7906566 | 8.21E-64 | dispersed | |
Cpe11g00250 | Cpe-Chr11:1356006 | Cpe07g00370 | Cpe-Chr7:2375874 | 2.32E-180 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49730 | PF16421 | E2F_CC-MB | 1.90E-23 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe07g00370 | K06620 | - | csv:101211469 | 510.76 |