Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00370 ATGTTGAACGCCGTCGAAGATCTCCTCCTCCGTCACGGACACTCCGATTTCCGATCACATCTCCTTCCTTCTCACTCTCACCATCGCGGCGACATGTCCTTGTCTTCGTCTTCTGCTTCTTCTTCTCTTGCTCAACCTATTCCTCAGTGTTTCCGTCAGTATCATCGATCTTCTCCGCCGTCGGATCAATCCAACGCTTGCGACGGTCGTCTTGCTCTCGATGCACATTCTACAGTTGCTATGCTCGACTTGAAACGGACATATGATATTAATGACTCTGAGGCTTTGGCTAGCAAACGAGCTGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTCTTGTGAACCAGTATCTAATGCAACTGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCCAGGACTAAAAAATCTACAGATGAGAATCTTGATGGTCCTAATTTATCTACTAACGGTCGGTACGACAGCTCTTTAGGCTTCTTGACGAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATCTAAATAAAACGGCAGACATATTAAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTTGAAGGGATAGGGCTTATAGAAAAAACCACCACGAATCACATACGTTGGAAGGGAGGCGTGAGGCATGACGCTCAAGAGCTCAACGATCAAGTTGGTAGATTTAAGGCTGAAGTTAAGAGTTTATATGCAGATGAACGCAGACTTGATGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGAAAATCACAGAAAGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATAAAAATCACAGAAAGAATCTTTTTATGACAGAAGAAGATATCTTGCAGATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCCCAGGCTAGCTATATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAAAAGCACCACTGGGCCGATTGATTTGTACCTCTTG 1062 42.28 MLNAVEDLLLRHGHSDFRSHLLPSHSHHRGDMSLSSSSASSSLAQPIPQCFRQYHRSSPPSDQSNACDGRLALDAHSTVAMLDLKRTYDINDSEALASKRAVASEQRMRSNDSSCEPVSNATEKQNKKLKLQKNSKSRTKKSTDENLDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADILKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGVRHDAQELNDQVGRFKAEVKSLYADERRLDELIRMKQELLRNLEENENHRKMKQELLRNLEENKNHRKNLFMTEEDILQIPCFKNQTLIAVKAPQASYIEVPDPDEEACFSERQCRLIIKSTTGPIDLYLL 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2375874 2379041 + Cp4.1LG07g03640.1 Cpe07g00370 472177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00370 354 Gene3D - 228 354 - -
Cpe07g00370 354 SUPERFAMILY E2F-DP heterodimerization region 271 353 IPR037241 -
Cpe07g00370 354 SUPERFAMILY E2F-DP heterodimerization region 234 275 IPR037241 -
Cpe07g00370 354 CDD E2F_DD 233 354 IPR032198 GO:0046983
Cpe07g00370 354 Coils Coil 228 289 - -
Cpe07g00370 354 MobiDBLite consensus disorder prediction 107 125 - -
Cpe07g00370 354 PANTHER TRANSCRIPTION FACTOR E2F 22 274 IPR015633 GO:0000978|GO:0006357
Cpe07g00370 354 PANTHER TRANSCRIPTION FACTOR E2F 275 354 IPR015633 GO:0000978|GO:0006357
Cpe07g00370 354 SMART E2F_TDP_2 157 222 IPR003316 GO:0005667|GO:0006355
Cpe07g00370 354 Pfam E2F/DP family winged-helix DNA-binding domain 159 222 IPR003316 GO:0005667|GO:0006355
Cpe07g00370 354 PANTHER TRANSCRIPTION FACTOR E2FC 22 274 - -
Cpe07g00370 354 PANTHER TRANSCRIPTION FACTOR E2FC 275 354 - -
Cpe07g00370 354 Pfam E2F transcription factor CC-MB domain 239 353 IPR032198 GO:0046983
Cpe07g00370 354 SUPERFAMILY Winged helix DNA-binding domain 157 220 IPR036390 -
Cpe07g00370 354 MobiDBLite consensus disorder prediction 21 42 - -
Cpe07g00370 354 Gene3D - 152 224 IPR036388 -
Cpe07g00370 354 MobiDBLite consensus disorder prediction 101 154 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00370 Cpe11g00250 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00370 Cpe-Chr7:2375874 Cpe16g00820 Cpe-Chr16:7906566 8.21E-64 dispersed
Cpe11g00250 Cpe-Chr11:1356006 Cpe07g00370 Cpe-Chr7:2375874 2.32E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49730 PF16421 E2F_CC-MB 1.90E-23 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00370 K06620 - csv:101211469 510.76