Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00374 ATGAGAAGATTGCACAAAGGGAGAAGGGTTTCATGGGCTTCAGATCTTAATCTCCGGCAGGTTAGATTGTTCTTGTCAGAAGACTCTCCTTCCCAAGTGGGATTGGGTGCTCAAGATCACCTTCAAGCAAAGACGTCATGGCTCTTGCATTCTACCGGATCGGGTTCTGATGACATTTTGCCTCCCGGATTTGAAGTAGCTCATCCTGAGAATCAGTTGCAGATTAAGCTCTCACAAATTCCTGTAAATCAATGGAAATGTCCACCTAAGTTTGTGCTGAATTTGACGTGGCGAGTGGTTGTTGGTGAAGAAAGCCAAGAGATTGAGGTTGAAAATCAGAGAGAAATGAGAGTACTCGAAGCGGTTTATCCTCGAGCATCTGCGATACCTCCTAACCCTTCCATAGCAGCTGATTCAGAACGTACCGATGTCGATGACAGTCAGACACCTTTGATTCCCATTACTCCTGTTGAAGATGAAGATGCATCAACCGAAATCTCATCTGATTATGCAAGCCCTGGTGCTGTCCTTATGAGTGCACAACAGTCCCTTTCTGTTCATGCTGGTACGTATACACCTCAACATGTTTTTCCGAATATGTCTTCTACTTCTAGTGCGAGTTCCATGGCTGGAATGGATCTGGGCAATGAACCTGATGTAGCTGCTGCTGCATCAGCGGCACTCAGTGCACTTGTGAAGAGCAATGAGATGGGTAACACGATTGACAGTGAATTGCTTGTTAAGATTCTTAACAATCCAAAAATGATTGAGCAGCTGGTTGTGGATTCTGGTACTGTCACTAGCTCTCAAAAGCCAATATCATCTCCTGACCCGTCGCTTGTACATATGCATATGACCGAAACCAATGCCACGGTTGCGCCTGCATCGGGGGGTCCTTTTTTCGCTCAACCAAATGGGGCAACTGTAGGACCTGTCCCCAATGCTCACCCTTCCTCAAGAGGTGTTCCAGTTTCTTCCCTGCCTTCCACTGGACCTCCAATGAAGGACTTGAACTACTATAAAAGTTTGATTCAGCAACACGGAGGAGAGAGACAAGACGATTTCCCTCGACAGCAATTCGGGAACCGTCACAGCCAACCATCAGGAACAAACCAGGACTTCTTACATAATAACCAGCCATCAAGAGATGGGAAGTTCAGGATAATGAAGCCTTGCATATACTTCAACAGCTCAAGAGGATGTCGACATGGAGCCAATTGTGCGTATCAGCACGACCCCGCATTTCAGCAAAGAAGTAGTAGCGCGCCCGAAATGCCTAGCGCCAAGAGAACAAAAGTCGATCGAGAAATCAGCAGTTAA 1320 46.52 MRRLHKGRRVSWASDLNLRQVRLFLSEDSPSQVGLGAQDHLQAKTSWLLHSTGSGSDDILPPGFEVAHPENQLQIKLSQIPVNQWKCPPKFVLNLTWRVVVGEESQEIEVENQREMRVLEAVYPRASAIPPNPSIAADSERTDVDDSQTPLIPITPVEDEDASTEISSDYASPGAVLMSAQQSLSVHAGTYTPQHVFPNMSSTSSASSMAGMDLGNEPDVAAAASAALSALVKSNEMGNTIDSELLVKILNNPKMIEQLVVDSGTVTSSQKPISSPDPSLVHMHMTETNATVAPASGGPFFAQPNGATVGPVPNAHPSSRGVPVSSLPSTGPPMKDLNYYKSLIQQHGGERQDDFPRQQFGNRHSQPSGTNQDFLHNNQPSRDGKFRIMKPCIYFNSSRGCRHGANCAYQHDPAFQQRSSSAPEMPSAKRTKVDREISS 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2411767 2416808 - Cp4.1LG07g03670.1 Cpe07g00374 472181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00374 439 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6 1 434 - -
Cpe07g00374 439 MobiDBLite consensus disorder prediction 415 439 - -
Cpe07g00374 439 MobiDBLite consensus disorder prediction 130 163 - -
Cpe07g00374 439 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 434 - -
Cpe07g00374 439 MobiDBLite consensus disorder prediction 359 379 - -
Cpe07g00374 439 MobiDBLite consensus disorder prediction 295 382 - -
Cpe07g00374 439 ProSiteProfiles Zinc finger C3H1-type profile. 386 414 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00374 - - - csv:101207454 706.442
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00374 Cpe11g00245 CCT
Cpe07g00374 Cpe11g00245 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00374 Cpe-Chr7:2411767 Cpe19g00842 Cpe-Chr19:6240353 1.02E-61 dispersed
Cpe10g00653 Cpe-Chr10:3759928 Cpe07g00374 Cpe-Chr7:2411767 1.01E-77 wgd
Cpe11g00245 Cpe-Chr11:1328053 Cpe07g00374 Cpe-Chr7:2411767 0 wgd
Cpe19g00848 Cpe-Chr19:6277665 Cpe07g00374 Cpe-Chr7:2411767 5.72E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1073 . . . . . . . . . Cmo12g00367 . . . Car12g00394 . . Cpe07g00374 Bhi04g00242 . . . Hepe10g0137 . . Cla08g01436 Cam08g1916 Cec08g1492 . Clacu08g1606 . Cre08g1392 . . Cone17ag1391 . . . . . Blo17g00748 . . . . . . Bma05g00161 . . . Cma12g00416 Cma05g00295 Car05g00244 . Cpe11g00245 . . . . . . . . . . . . . . . Lsi08g01336 Csa02g02120 Chy03g01397 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007937 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 1 4 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49731 None None None None Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00374 Cpe_Chr07 FPKM 7.904815 7.795121 9.874293 11.425012 8.999943 8.303142 10.394157 9.509486 10.167533 11.47708