Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00378 ATGGAGGGAGACAATAAGAAGTCTGGTTTTAGGAAAAGAACGAAGCCCAAGGAGGGTGGGTTTGACTCAGATGATGACGAGCCTATTGGATCTCTGCTGAAGTTGAAGAGATCACGAAACTCCATGAAGAATAAGGTAGGTGTAGATTTTGGCGGTGAAAGAGACAAGATGGTTGACAAGAAAGTAGCGAAGTTGCCGGTGCAAGAGGAGGACTTTGGGGGGATGGATGATACTTTAGCAAGTTTCAGAAAGAAGTTGAGGCGTCCTAAGAAGGTTAGCGGGTTCGGAACATCTAAGGAACAGAGTTCTGGTTTTAGTCGGGCAGAATCATCAGATCCGATATCGAACGCATGCAGAGGACGAGGGGATTTAGACTTGAGTTTTAGACCAGAAAATAGTGAATCAATGGGCCGTGAAGGGTCTGATCCATCTTCAAAGATTGATGCAGAAACGGTGTGTGAAACACCTGATTTTGAATTAAAACACATGGAGACAGGTACCTCTAGGAGGAGAAGTTCTAATTGCTCTTTTGACGAACAGTTGGATGATTCATTGTCAGCATTTGCCCAAAAGATTCAATCTGGTTCAACTGGGAAATCATTGGTATCGACAACATGTAAACCGGAATGCAAGGCTGAGACTTCAGAAGATAAATTGAGTAACTTTTCTAGAGTTTTATCTGGGGATCAAGAAACCTACCCTGTAGTGAGTTCTAGTTCTTCTGCTAAGTTGGATCAGGTTGTCAAAAAATCAGATTCTGAACTTACTAGGCCATATTTAATATCCTGTTCCTGTTACGGTAGAGAAAATCGTAATCCTGGTCTAGGACAATGCCAAGGGGTTGAAGGAGACCGAGAAGAAATTCAATGCGGTGTAAATAATTATGATAATGCTGACATCAAACCATGCATACCAAACGTAGTTGCTGATGAAGATGGCAAAAACTTTAGTCATATTCAATTTGGGGACAATTTCCAGTCGCTGGAAAGGAAGGTCTCCTGTGAAACCAAGAATGGACTAAAACATTGTTCATGTGGCGATACGATGGGGCTAGGTAAAAGTCATCTTAATGAAAATATGCACAATTCTTGTCATGCCCTAGAACAGGCAAATGAAAACAATGGCCTTTGTGGGGGTGTTTCCAATGGAGATTTTTGTGACGTGATGGCCCATGAGTCCACAGTCGCTTTGTCTAAAACAACTTCAGGTGTAGATTGCGAAGGAAAAGACAGATCACTTGATATACATTATGATGAATTGCCTAACTCCGCCAATGTTTGTGAAAGTTATTCCAAAGGATTCTGTAAATCTACTAAAAAATTAAAGATTTCTAATCCTTCTTCCGAAGGAACTACACTCTCCAATCTTGAATTGTTGGCAGCCTTCGAGTCGATGAAAGCGGATAAAACTTGCTGTGACTCTGGTAATTTAGATACTGGTACTGACGAGCGGAATACTAAAGTTGGTTCTGTGCAGAATGAAAATGCTCTGATCTCTCATAGGATTTCAGATTCAACTGCTGTCTGCCCAGTTGGGAATTGCAGTATGATATCAGATGGTCAACCAGCCAAGGCTTCTGTAGAGGTAGATGGTCCAAATAATAATATACCTGCTGATAAAGATGTCAAGGTATCTTCTCCTGGGTCTTTGACTCCAGATGATAATGACATTGAGGATGTAATATCAGCTCCTGGAAGTGAAAAAGATTTAAAGCTTTCAGCTTTGCAACGTGTTGTGCGCAAGACAAAGAAGCCTAGACGTGATGACATGGCTTATGAAGGAGATATTGATTGGGAGGTTTTGCTTAATGAGCGTGCAGTTGATAGTGACTATTCTTTTAGATCAAGAAGGGATTCTACATCAACAACTTTTACGGAGGCGGAAACCGGGGGTAGAGCTGCTGTGTCTGCAGGGCTTAAGGCTCATGCAGTTAGCCTACTTGAGAAGATTAAATTTAAGGAAGTGCTTAAGAGAAAAGGTGGGCTTCAAGAGTACTTAGCGTGCAGGAATCAGATCCTGGGCCTTTGGTGTAAAGATGTTACTCGCATTTTACATCTCGTTGACTGTGGGATCACTGATACTCCCTCTGTGGATGAACCAACACATTTTTCCCTTATTAGGGAGATCTATGCGTTTCTTAATCTTCGTGGTTATATAAATGCGGGAATTGCTTCTGAAAAAGCCAAATCAGAATCTGGCTTCAAGTATGATTGTGAACGGGGAGAAAAGAAAGTTGGAGACATTAGTGTTGCTTCAGCTGCTGATTCTGAGGAAGGCATTTCTGCCATGGTTAAAAATTCTGATGCTTCTAATGCCAAGAACAGTGTTTCAGCTGGCTGTGAACTACCAGAAGACACTGAAGGAAGAGACCTTGTGACTGCAAATAATCTGGAGTTGCAAAAATTTGCGGAACACGAACAAGAATTGGTACATGACTTGGAGTATGGTACTCATGATCCTTCACCGGGAAAATTGGTAGGTATTGATGTTCCAGGTGAAGCTGCCGCCCATTTAGCTCATCATTCAAGTAATGGTTGGCACCCAATTGGCTCCTCTAATGAGTGTGTAGGGGGTGATGAACAACAGCAGAGTAATTCAGAAGTCAGAAAAAAGGTAATTGTTATTGGAGCTGGCCCTGCTGGCTTGACTGCTGCCAAGCACTTGCATCGTCAGGGCTTTACTGTCAACGTACTTGAAGCCAGGAATAGATTAGGAGGTCGTGTTTATACAGATCGCTCCTCTCTTTCGGTTCCTGTAGATCTTGGTGCAAGTATTATTACAGGAGTAGAGGCTGATGTTGCAACTGAAAGAAGACCTGATCCTTCTTCATTGATTTGCACTCAATTGGGCCTTGAGTTGACTGTGTTAAATAGTGACTGTCCTCTCTATGATATCGTTACATGCAAAAAAGTTCCGGTAGACATTGATGAAGCTTTGGAAGCAGAATATAATAGTCTTCTTGATGACATGGTGTTGCTTGTTGCACAAAGAGGGGAGCATGCAATGACCATGTCTCTTGAGGAGGGTTTAGAATATGCCCTTAAGCGACGACGCATGGCTCGATTGGGAATGGATGTTCGTTCTGAGGAAGAAGTTTTGAGTCCCTTTGAGAGGCGAGTTATGAACTGGCATTTGGCTAACTTGGAGTATGGTTGTGCTGCTATGCTGAAGAAAGTATCGCTTCCTCATTGGAACCAGGATGATCTTTATGGAGGTTTTGGAGGAGCTCATTGTATGATCAAAGGGGGTTATAGCACTGTTGTTGAGTCTCTTGGTGGAGGACTCAATATTCACCTAAACCATGTTGTGGCCGATATTTCTTACAGCACCACTGATATTGGGTCGAATGTAAAACAATGTGCGAAGGTAAAAGTTTCCACAACCAATGGATGTGAGTTTCTTGGAGATGCTGTCCTTATTACTGTGCCTCTTGGGTGTTTGAAAGCAGAATCTATTAAGTTTTCCCCACCATTGCCTGAATGGAAGCGTCTGTCCATCCAGCGCCTTGGTTTTGGAGTTCTGAACAAAATTGTTCTTGAATTTCCAGAAGTTTTCTGGGATGACTCTGTGGATTATTTTGGGGCAACTGCAGAGGAAACAAAGTGGAGGGGGCAGTGTTTCATGTTTTGGAATGTAAGAAAAACAGTTGGTGCTCCCGTTCTCATTGCGCTAGTGGTTGGTCAGGCGGCTGTGGAGAGGCAATACATGAGCTCTTCCGATAACATAAGCCATGCATTAATGGTTCTTCGCAAACTTTTTGGAGAAGCTGTGGTGCCTGACCCAGTTGCATCTGTGGTAACTGATTGGGGAAGAGATCCGTTTAGTTATGGTGCTTACTCCTATGTTGCTGTTGGTGCGTCTGGAGAGGACTATGACATTTTAGCCAGGCCTGTTGAAAACTGTTTGTTTTTTGCTGGTGAAGCTACATGCAAGGAGCATCCTGACACTGTTGGGGGTGCAATGATGAGTGGTCTAAGAGAGGCTGTACGCATGATTGATGTATTGAGCACTGGTTATGATTATACAGCAGAAGTAGAGGCAATGGAAGCTGCTCAGAGGCAGTCTGAGTGTGAGAATGATGAGGTTGGGGACGTAATTACACGACTCGATGATGTTAAGATCTCTGATGCTCTCTACAAAAATTCTATGGATTGTGCCAAAGAAGCCTTACTTCAAGACTTGTTTTCTAGTGCGAAAACGACTGCAGGGAGATTGCATGTCGCAAAAGAGTTGTTGAAACTCCCTGTTGAGACATTGAAGTCCTTCGCAGGGACCAAAGAAGGTCTTACAGTTCTCAACTCATGGATTCTGGACTCAATGGGGAAGGATGGGACTCAACTTCTTCGGCAGTGTGTTCGTATTCTTGTGCTAGTTTCAACTGATCTACTTGCAGTTCGCTTATCAGGCATAGGTAAAACGGTCAAAGAAAAGGTATGTGTGCATACAAGCCGTGACATTCGCGCCATTGCGAGTCAGTTGGTTAGCATTTGGCTTGAAGTTTTCCGTAAAGAAAAAGCTGCTCATGGGGGGTTAAAACTCTCAAAGTCGGTTTCTACTGTAGAATCATTGAAGAGGAAATCTAATAAAGATTCTTCTGGGAGACCTCCTTTGCATGCAAACAACAGTACACTGGATAGTAGAGGCAATTTGCAGACTTCTACAATTCACTTGCCTTCTGATGTCAATACGAAAAATGATAATAGCAAACAATTGAAATTAGAAATGGAAAATTCATCAAAATCAGATATCAGTTCATCAAGGTCAAGGGGTTCATTAGGAAAGCAGGATGCAGAAATGGAAGACAACAACATTGCTATGACAGAAGAAGAGGAGGCTGCCTTTGCTGTTGCTGAGGCAGCACGTGCAGCAGCACTTGCAGCTGCGAAGGCGTATGCATCTTCTGAAGCTAAGTGTGCATTGCAGCTCCCTAAAATCCCTTCCTTTCACAAATTTGCTCGAAAGGAGCATTGCGCACAAATGGATGAGTGCGAGTCTAAAAGGAAATTGTCTGGCAGTGTGCTAGGAAGACAGGATTGTATATCAGAAATAGATTCAAGGAATTGCAGGGTCAGGAACTGGTCTGTGGAATTTTCTGCTGCTTGTGTTAATCTTGAAAGTTCACGGATGTCTGCAGATAACCTTTCGCAAAGGAGCCATTCAAATGAGATTGTTAGCCAATTAAACTTCAGGGAGCACTCCGGTGAAAGTGCCCCTGTGGATAGCAGTATATACACGAAAGCATGGGTTGATACAGCTGGCAGTGTTGGAATGAAAGATTATCATGCAATTGAAAGATGGCGGTCTCAAGCAGCTGCAGCTCATGTAAACGACGAGGAGGATTCAAACACTGCTGGGAATAAACCCACTTGGAATAGTGATCAATTAGCGAATGAAAGCTCGATATCACAAGTGACGATCAACAAGGAGCCTTTAAGAAACCATCATCGTGGGGCTGACAGAATTAAGCAGGCCGTAGTTGATTATGTTGCATCTCTCTTGATGCCCCTTTACAAAGCAAGGAAAATTGACAAGGATGGATACAAGACAATTATGAAGAAAAGTGCAACCAAGGTCATGGAACAGGCTACTGATGCAGAGAAAGGCATGACTGTTTCTGAGTTTCTTGATTTCAAACGTAGGAACAAGATTCGTGCTTTTGTTGATAAATTAATAGAGAGGCATATGGCTACGAAGCCAGTAATGGACTCATGA 5712 42.84 MEGDNKKSGFRKRTKPKEGGFDSDDDEPIGSLLKLKRSRNSMKNKVGVDFGGERDKMVDKKVAKLPVQEEDFGGMDDTLASFRKKLRRPKKVSGFGTSKEQSSGFSRAESSDPISNACRGRGDLDLSFRPENSESMGREGSDPSSKIDAETVCETPDFELKHMETGTSRRRSSNCSFDEQLDDSLSAFAQKIQSGSTGKSLVSTTCKPECKAETSEDKLSNFSRVLSGDQETYPVVSSSSSAKLDQVVKKSDSELTRPYLISCSCYGRENRNPGLGQCQGVEGDREEIQCGVNNYDNADIKPCIPNVVADEDGKNFSHIQFGDNFQSLERKVSCETKNGLKHCSCGDTMGLGKSHLNENMHNSCHALEQANENNGLCGGVSNGDFCDVMAHESTVALSKTTSGVDCEGKDRSLDIHYDELPNSANVCESYSKGFCKSTKKLKISNPSSEGTTLSNLELLAAFESMKADKTCCDSGNLDTGTDERNTKVGSVQNENALISHRISDSTAVCPVGNCSMISDGQPAKASVEVDGPNNNIPADKDVKVSSPGSLTPDDNDIEDVISAPGSEKDLKLSALQRVVRKTKKPRRDDMAYEGDIDWEVLLNERAVDSDYSFRSRRDSTSTTFTEAETGGRAAVSAGLKAHAVSLLEKIKFKEVLKRKGGLQEYLACRNQILGLWCKDVTRILHLVDCGITDTPSVDEPTHFSLIREIYAFLNLRGYINAGIASEKAKSESGFKYDCERGEKKVGDISVASAADSEEGISAMVKNSDASNAKNSVSAGCELPEDTEGRDLVTANNLELQKFAEHEQELVHDLEYGTHDPSPGKLVGIDVPGEAAAHLAHHSSNGWHPIGSSNECVGGDEQQQSNSEVRKKVIVIGAGPAGLTAAKHLHRQGFTVNVLEARNRLGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICTQLGLELTVLNSDCPLYDIVTCKKVPVDIDEALEAEYNSLLDDMVLLVAQRGEHAMTMSLEEGLEYALKRRRMARLGMDVRSEEEVLSPFERRVMNWHLANLEYGCAAMLKKVSLPHWNQDDLYGGFGGAHCMIKGGYSTVVESLGGGLNIHLNHVVADISYSTTDIGSNVKQCAKVKVSTTNGCEFLGDAVLITVPLGCLKAESIKFSPPLPEWKRLSIQRLGFGVLNKIVLEFPEVFWDDSVDYFGATAEETKWRGQCFMFWNVRKTVGAPVLIALVVGQAAVERQYMSSSDNISHALMVLRKLFGEAVVPDPVASVVTDWGRDPFSYGAYSYVAVGASGEDYDILARPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRMIDVLSTGYDYTAEVEAMEAAQRQSECENDEVGDVITRLDDVKISDALYKNSMDCAKEALLQDLFSSAKTTAGRLHVAKELLKLPVETLKSFAGTKEGLTVLNSWILDSMGKDGTQLLRQCVRILVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSIWLEVFRKEKAAHGGLKLSKSVSTVESLKRKSNKDSSGRPPLHANNSTLDSRGNLQTSTIHLPSDVNTKNDNSKQLKLEMENSSKSDISSSRSRGSLGKQDAEMEDNNIAMTEEEEAAFAVAEAARAAALAAAKAYASSEAKCALQLPKIPSFHKFARKEHCAQMDECESKRKLSGSVLGRQDCISEIDSRNCRVRNWSVEFSAACVNLESSRMSADNLSQRSHSNEIVSQLNFREHSGESAPVDSSIYTKAWVDTAGSVGMKDYHAIERWRSQAAAAHVNDEEDSNTAGNKPTWNSDQLANESSISQVTINKEPLRNHHRGADRIKQAVVDYVASLLMPLYKARKIDKDGYKTIMKKSATKVMEQATDAEKGMTVSEFLDFKRRNKIRAFVDKLIERHMATKPVMDS 1903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2440761 2450238 + Cp4.1LG07g03820.1 Cpe07g00378 472185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00378 1903 ProSiteProfiles SWIRM domain profile. 630 730 IPR007526 GO:0005515
Cpe07g00378 1903 SUPERFAMILY FAD/NAD(P)-binding domain 869 1334 IPR036188 -
Cpe07g00378 1903 MobiDBLite consensus disorder prediction 95 113 - -
Cpe07g00378 1903 Gene3D - 872 1330 IPR036188 -
Cpe07g00378 1903 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 574 1899 - -
Cpe07g00378 1903 MobiDBLite consensus disorder prediction 1 33 - -
Cpe07g00378 1903 MobiDBLite consensus disorder prediction 1577 1592 - -
Cpe07g00378 1903 MobiDBLite consensus disorder prediction 523 555 - -
Cpe07g00378 1903 SUPERFAMILY Homeodomain-like 632 726 IPR009057 -
Cpe07g00378 1903 MobiDBLite consensus disorder prediction 1 50 - -
Cpe07g00378 1903 Gene3D - 630 733 IPR036388 -
Cpe07g00378 1903 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1425 1509 IPR035441 -
Cpe07g00378 1903 MobiDBLite consensus disorder prediction 155 174 - -
Cpe07g00378 1903 MobiDBLite consensus disorder prediction 1771 1797 - -
Cpe07g00378 1903 MobiDBLite consensus disorder prediction 1522 1597 - -
Cpe07g00378 1903 PANTHER FLAVIN MONOAMINE OXIDASE 574 1899 - -
Cpe07g00378 1903 MobiDBLite consensus disorder prediction 88 150 - -
Cpe07g00378 1903 Pfam SWIRM domain 640 720 IPR007526 GO:0005515
Cpe07g00378 1903 MobiDBLite consensus disorder prediction 1533 1566 - -
Cpe07g00378 1903 MobiDBLite consensus disorder prediction 1782 1797 - -
Cpe07g00378 1903 Pfam Flavin containing amine oxidoreductase 880 1332 IPR002937 GO:0016491
Cpe07g00378 1903 Gene3D - 959 1287 - -
Cpe07g00378 1903 SUPERFAMILY FAD-linked reductases, C-terminal domain 1170 1281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00378 - - - bhj:120075972 3045.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00378 Cpe11g00239 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00378 Cpe-Chr7:2440761 Cpe13g00758 Cpe-Chr13:6947779 2.98E-90 dispersed
Cpe16g00329 Cpe-Chr16:5110327 Cpe07g00378 Cpe-Chr7:2440761 1.56E-06 dispersed
Cpe07g01051 Cpe-Chr7:9409446 Cpe07g00378 Cpe-Chr7:2440761 8.58E-35 transposed
Cpe11g01171 Cpe-Chr11:9627568 Cpe07g00378 Cpe-Chr7:2440761 2.98E-27 transposed
Cpe11g00239 Cpe-Chr11:1291643 Cpe07g00378 Cpe-Chr7:2440761 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1052 Blo01g01586 . . . Bpe02g00363 . Bma04g00234 . Cmo05g00295 Cmo12g00373 . . . Car12g00399 . . Cpe07g00378 Bhi04g00235 . . . Hepe10g0131 . . . . . . . . . Cone4ag1951 Cone7ag1863 . . . . . . . . . . . . . . . . . Cma12g00423 Cma05g00288 Car05g00239 . Cpe11g00239 . . . . . . . . . . . . . . . Lsi08g01341 Csa02g02114 Chy03g01402 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49733 PF01593 Amino_oxidase 9.50E-100 CL0063 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00378 Cpe_Chr07 FPKM 2.273005 2.772439 2.972216 3.064179 6.478899 6.210993 6.800975 1.587103 1.570719 1.501449