Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00379 ATGTCGTCAACCTTCAGCGGCGATGAAACGGCGCCCTTCTTCGGCTTCCTCGGCGCTGCTGCGGCCCTCGTCTTCTCCTGTATGGGAGCTGCTTACGGAACGGCGAAGAGTGGGGTGGGAGTTGCGTCGATGGGAGTAATGAGGCCTGAGTTGGTTATGAAGTCGATTGTGCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGGCTTATTATTGCTGTGATTATCAGTACGGGGATTAACCCTAAGGCCAAATCTTATTACCTCTTCGATGGCTACGCGCATCTTTCCTCTGGGCTTGCTTGTGGCCTTGCTGGTCTATCTGCTGGCATGGCTATTGGGATCGTCGGCGATGCTGGTGTTAGAGCCAATGCACAGCAGCCTAAGCTTTTCGTTGGGATGATTCTTATTCTAATTTTCGCCGAAGCACTGGCTCTCTATGGACTTATTGTTGGCATTATTCTCTCCTCCCGAGCTGGTCAGTCGAGAGCTGATTAA 498 51.61 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2450787 2452888 + Cp4.1LG07g03850.1 Cpe07g00379 472186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00379 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Cpe07g00379 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Cpe07g00379 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe07g00379 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe07g00379 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe07g00379 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe07g00379 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Cpe07g00379 165 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Cpe07g00379 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Cpe07g00379 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Cpe07g00379 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Cpe07g00379 165 Gene3D - 11 162 IPR035921 -
Cpe07g00379 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cpe07g00379 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00544 Cpe-Chr2:3249150 Cpe07g00379 Cpe-Chr7:2450787 9.23E-113 dispersed
Cpe06g00629 Cpe-Chr6:3901365 Cpe07g00379 Cpe-Chr7:2450787 3.21E-62 dispersed
Cpe07g00275 Cpe-Chr7:1822398 Cpe07g00379 Cpe-Chr7:2450787 1.37E-21 dispersed
Cpe07g00379 Cpe-Chr7:2450787 Cpe11g00349 Cpe-Chr11:1892479 6.82E-22 dispersed
Cpe07g00379 Cpe-Chr7:2450787 Cpe07g00380 Cpe-Chr7:2456073 2.81E-81 tandem
Cpe11g00238 Cpe-Chr11:1288221 Cpe07g00379 Cpe-Chr7:2450787 2.70E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00379 K02155 - pvy:116145974 288.885