Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00383 ATGGAAGCCAAGGAGCCAGTACAAGGAGTTATTCAAGCCTCCAATGGTCTAGAAGAGACTATTCGTGTTTCTATTAGGTTAAGGCCTTTGAACGAAAAGGAATTGACGAAGAACGATTCGTCCGATTGGGCATGTCTCAACAACAACTCCATCATATTTAGAAGCACTTTACCAGACCGCGCTATGTATCCCCAATCTTACACATTTGATAGAGTATTTGGATGTGACAGTACCACAAAGCAAGTTTATGAAGAAGGGGCTAAGGAAGTTGTTCTTTCAGTCGTCAATGGCATTAACTCAACAATTTTTGCATATGGGCAAACAAGCAGTGGAAAGACATACACCATGAATGGAATCACGGACTATTCTGTGGCAGACATTTATAATTACATGGAGACGCATCAAGAAAGAGAGTATGTGCTCAAGTTCTCAGCGATTGAGATATACAATGAAGCTGTGAGAGATCTCCTTAGCTTTGAAAATGTCCCACTTAGACTTCTTGATGATCCTGAGAAAGGAACAGTTGTTGAGAAACTTACGGAGGAGACATTGAAAGATAGGAACCATCTCCAAGAGCTTCTTTCCTTTTGTGAAGTTCAAAGAAAGATTGGGGAGACGACTTTGAATGAAGCTAGCTCCAGATCCCATCAAATCTTAAGACTGACAATTGAAAGCTCAGCTCGGAAATTTAAGAAGTCTGAAAGTGGAAGCAGTTTGACGGCTACAGTGAATTTTGTTGATCTTGCGGGAAGTGAACGAGCTTCCCAAACAATGTCGGCTGGTACAAGGCTCAAAGAAGGTTGCCATATAAACCGGAGTTTGCTGTCTCTGGGAACTGTTATTCGCAAATTAAGCAAAGGAAGGACTGGGCACGTACCTTATAGAGATTCCAAGTTAACACGCATACTGCAGAATTCTCTAGGGGGGAATGGTCGAACAGCTATCATTTGTACTATGAGTCCTGCACGTAGCCATGTTGAACAATCAAGAAACACATTGCTATTTGCTACTTGTGCAAAGGAGGTGAGTACAAACGCACATGTAAATGTGGTAGTGTCAGATAAGGCATTGGTGAAGCAGTTGCAAAAGGAATTGGCTAGACTTGAGAGTGAGATGAAGAACATAAAACCACTTCCTGTCAAAGGTGATTCTAATTCCTTGTTGAAAGAGAAGGAAATTCTAATTGAGCAGATGGACAAAGAGATCAAGGAATTGACTCGGCAGCGTGATCTTGCTCAGTATCGAATCGAGAATTTATTGCATTCGGTTGGAGAAGATAGGATATTTAAGCGAAGTGAAAGCACAGTCCAAATAGTGCCGGAAACAATGTCGGAAACAATGTCGGAAACAGTGCCAGAAACAGTGCCGGAAACAGTGCCAGAAACAGTGCCGGAAACAGTGCCGGAAACAGTGCCGGATCTGGTTGAGCTAGATCTAGATCTACGTTCTGATGACTCAAGTCTCAAGACTTTTGACACATTTAATGGACAAGAAGGACAAGAAGGACAAGAAGGACAAGAAGGACAAGAAGAGAATAGCCCTCAGAAGGTTAATCCTCTATTTTCTATGAGTCATGATGATGATTTTCTATTAGATAGCAGCACTCCTGAGTTGGCTGGACCTGATCCTTATAACAACTGGGAAGAGGTTGCTCAACGTGTTCGAGGAAATTCCGAAGATAGTTATAAGGATGTTCAATGCATTGAGCTGGAGGAATCAAACCAAACACCAAATGAAAATGTTGAGTTGGCTTTAGCTAGATTGGAAGACAATGAAGGACAGATGATCAGTAGTTCTCGCACTAATCAAGTGACATCCCCACAAAGAAAGAACAAGGAGATAGTTACAATCAACAAAGATTATGTTAGCGGTGGTTTTATGCCGAACACTGCGGAGCCGAAGAGAACATTAAATTGTATTGTAAATTTTTATCCTGCTGAGCAATCATTCAGCTCAATTGAAGCAGCAAAAGATCGGTTTCAAAACTTAAAGTTGACCAGAAGCAAAAGTTGTTTGACTGTTCTAATGGAACTCCCACCTTCTACTTGGGTTCAGAAGCCAGAGCCGGATAAGAAAGCTCAGCACAATGGATCTGAAATAAACTTCTCTGGACTAGCAGAAGGTAGTAGGAGAAAGCGCGGTTTAAGCTGCGGAAATTTAGAAACCGAGGAGTCACAATCGGTATGTAATCGTCCTTCGGAAGATAAGGCTTTGGAAATAATAGAAGAAGATGAAGATGATAATACGAGTGTTCTCAACTTCGCTACTGGGAAAAAAGGAAAGAGCAAAAATCGCGGCTGGGGAGGACCCCCAAGAGGGAAGAAGCTAAAGAAACCACACAAGATCTTGAATTGGAGGAGGAACAAGATTTTCAATCGCATTCAGATTGGCTTTTGGAGTTCCAAGGTCAACAGAGAGACATAA 2424 41.79 MEAKEPVQGVIQASNGLEETIRVSIRLRPLNEKELTKNDSSDWACLNNNSIIFRSTLPDRAMYPQSYTFDRVFGCDSTTKQVYEEGAKEVVLSVVNGINSTIFAYGQTSSGKTYTMNGITDYSVADIYNYMETHQEREYVLKFSAIEIYNEAVRDLLSFENVPLRLLDDPEKGTVVEKLTEETLKDRNHLQELLSFCEVQRKIGETTLNEASSRSHQILRLTIESSARKFKKSESGSSLTATVNFVDLAGSERASQTMSAGTRLKEGCHINRSLLSLGTVIRKLSKGRTGHVPYRDSKLTRILQNSLGGNGRTAIICTMSPARSHVEQSRNTLLFATCAKEVSTNAHVNVVVSDKALVKQLQKELARLESEMKNIKPLPVKGDSNSLLKEKEILIEQMDKEIKELTRQRDLAQYRIENLLHSVGEDRIFKRSESTVQIVPETMSETMSETVPETVPETVPETVPETVPETVPDLVELDLDLRSDDSSLKTFDTFNGQEGQEGQEGQEGQEENSPQKVNPLFSMSHDDDFLLDSSTPELAGPDPYNNWEEVAQRVRGNSEDSYKDVQCIELEESNQTPNENVELALARLEDNEGQMISSSRTNQVTSPQRKNKEIVTINKDYVSGGFMPNTAEPKRTLNCIVNFYPAEQSFSSIEAAKDRFQNLKLTRSKSCLTVLMELPPSTWVQKPEPDKKAQHNGSEINFSGLAEGSRRKRGLSCGNLETEESQSVCNRPSEDKALEIIEEDEDDNTSVLNFATGKKGKSKNRGWGGPPRGKKLKKPHKILNWRRNKIFNRIQIGFWSSKVNRET 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2470322 2476813 - Cp4.1LG07g03890.1 Cpe07g00383 472190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00383 807 MobiDBLite consensus disorder prediction 486 524 - -
Cpe07g00383 807 Gene3D Kinesin motor domain 11 374 IPR036961 -
Cpe07g00383 807 ProSitePatterns Kinesin motor domain signature. 241 252 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cpe07g00383 807 MobiDBLite consensus disorder prediction 488 520 - -
Cpe07g00383 807 PRINTS Kinesin heavy chain signature 292 313 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe07g00383 807 PRINTS Kinesin heavy chain signature 97 118 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe07g00383 807 PRINTS Kinesin heavy chain signature 242 260 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe07g00383 807 PRINTS Kinesin heavy chain signature 206 223 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe07g00383 807 Pfam Kinesin motor domain 26 342 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe07g00383 807 CDD KISc_CENP_E 20 342 - -
Cpe07g00383 807 Coils Coil 388 422 - -
Cpe07g00383 807 MobiDBLite consensus disorder prediction 443 465 - -
Cpe07g00383 807 ProSiteProfiles Kinesin motor domain profile. 20 342 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe07g00383 807 PANTHER KINESIN-LIKE PROTEIN KIN-7H 14 763 - -
Cpe07g00383 807 SMART kinesin_4 18 350 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe07g00383 807 PANTHER CENTROMERE PROTEIN E 14 763 - -
Cpe07g00383 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 376 IPR027417 -
Cpe07g00383 807 Coils Coil 351 378 - -
Cpe07g00383 807 MobiDBLite consensus disorder prediction 683 707 - -
Cpe07g00383 807 MobiDBLite consensus disorder prediction 749 777 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00383 K11498 CENPE; centromeric protein E - csv:101212680 1117.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00383 Cpe11g00236 CCT
Cpe07g00383 Cpe11g00236 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00383 Cpe-Chr7:2470322 Cpe14g00515 Cpe-Chr14:3250855 0 dispersed
Cpe11g00236 Cpe-Chr11:1271716 Cpe07g00383 Cpe-Chr7:2470322 0 wgd
Cpe15g00560 Cpe-Chr15:6422357 Cpe07g00383 Cpe-Chr7:2470322 3.62E-76 wgd
Cpe04g00106 Cpe-Chr4:952506 Cpe07g00383 Cpe-Chr7:2470322 1.57E-35 wgd
Cpe05g01286 Cpe-Chr5:8966598 Cpe07g00383 Cpe-Chr7:2470322 1.33E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1046 . . . . . . . . Cmo05g00291 Cmo12g00378 . . . Car12g00404 . . Cpe07g00383 Bhi04g00228 . . . . . . Cla08g01443 Cam08g1924 Cec08g1499 Cco08g1635 Clacu08g1614 . Cre08g1400 . . Cone17ag1382 . . . . Cme03g01903 . Blo18g00788 . . . . Bma01g00738 . . . . Cma12g00427 Cma05g00285 Car05g00235 . Cpe11g00236 . . . . . . . . . . . . . . . Lsi08g01346 Csa02g02109 Chy03g01407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008666 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00383 Cpe_Chr07 FPKM 3.273504 5.432674 3.468163 3.075778 5.778292 3.965961 3.794006 19.622711 20.827724 19.226856