Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe07g00385 | ATGAAGATTCAGTGTGATGTCTGTGAAAAAGGCGATGCGTCAGTGTTCTGCACGGCGGATGAGGCGGCGCTTTGTAATATCTGTGACCATCGTGTCCACCATGCCAATAAGCTCGCTTCGAAGCACCGCCGCTTCTCTCTGCTCCGCTCTGCTGCAGCGGAGGCACCTGTCTGCGATGTGTGCCGGGAGCGGCGAGGGTTCTTGTTTTGTCAACAGGATAGAGCGATTCTGTGTAGAGAGTGCGATGATCCAATTCATTCGGCTAATGAACTCACTATGAAACACGATAGGTTTCTTCTGACTGGGATTAAGCTTTCCACCACCGCTGCTCTGTACGCGCCGCCTCCCTCCGACGAGAAACCGATCAAAACTGGTCATCGTACTGGTTTTGATCACAAATCAAAGGGTTCAGTCAAGAAACCAACCGCTGTTCCTGCTGCTCCAGTAGGATGCACATCAAGTGTTTGTGTTAATGCCTCAACCAACATACCTCCGGCAGTAGCCATGAACAAGGGCGGCGGAGGTCAGATTCCGACAGGAGGCGGTGGCTCAGCCAGTAGCATATCGGAATATTTGATGGAGACACTTCCTGGGTGGCACTTTGAGGATTTACTCGATTCCTCTGTTCCTCCCCCTTTTATGGAGTGTGAAGGGTTGGGATTACCATTTGTGGAAGGTGATTTCAACAGTGGCCTTTCACCATCGGAGCGTTTGGAGCTTTGGGTCCCTCAGGGGCCGATGTATGGTTCAGGTTTGATGATGAACAGTGGGGTGAAGGACACAAAGGATTTGGTAGTAAACTCATCAAAAGTCAATAGAGCTTGGACAGATGATTGTTTCACTGTTCCTCAGATCACAAGTACAACAGCCCCATCTGCAGGCTTTAAGCGATCCAGATCTTTTTGGTATAACAATCACTAA | 921 | 49.73 | MKIQCDVCEKGDASVFCTADEAALCNICDHRVHHANKLASKHRRFSLLRSAAAEAPVCDVCRERRGFLFCQQDRAILCRECDDPIHSANELTMKHDRFLLTGIKLSTTAALYAPPPSDEKPIKTGHRTGFDHKSKGSVKKPTAVPAAPVGCTSSVCVNASTNIPPAVAMNKGGGGQIPTGGGGSASSISEYLMETLPGWHFEDLLDSSVPPPFMECEGLGLPFVEGDFNSGLSPSERLELWVPQGPMYGSGLMMNSGVKDTKDLVVNSSKVNRAWTDDCFTVPQITSTTAPSAGFKRSRSFWYNNH | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2483126 | 2484571 | - | Cp4.1LG07g03880.1 | Cpe07g00385 | 472192 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe07g00385 | 306 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
| Cpe07g00385 | 306 | CDD | Bbox1_BBX-like | 57 | 100 | - | - | |
| Cpe07g00385 | 306 | Pfam | B-box zinc finger | 54 | 96 | IPR000315 | GO:0008270 | |
| Cpe07g00385 | 306 | ProSiteProfiles | Zinc finger B-box type profile. | 53 | 100 | IPR000315 | GO:0008270 | |
| Cpe07g00385 | 306 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
| Cpe07g00385 | 306 | SMART | bboxneu5 | 53 | 100 | IPR000315 | GO:0008270 | |
| Cpe07g00385 | 306 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
| Cpe07g00385 | 306 | Gene3D | Classic Zinc Finger | 1 | 94 | - | - | |
| Cpe07g00385 | 306 | PANTHER | B-BOX ZINC FINGER PROTEIN 19 | 1 | 300 | - | - | |
| Cpe07g00385 | 306 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 300 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe02g00094 | Cpe07g00385 | CCT | |
| Cpe07g00385 | Cpe11g00234 | CCT | |
| Cpe02g00094 | Cpe07g00385 | ECH | |
| Cpe07g00385 | Cpe11g00234 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g00595 | Cpe-Chr1:3434320 | Cpe07g00385 | Cpe-Chr7:2483126 | 1.44E-37 | dispersed | |
| Cpe07g00385 | Cpe-Chr7:2483126 | Cpe17g01088 | Cpe-Chr17:8252826 | 7.82E-37 | dispersed | |
| Cpe11g00234 | Cpe-Chr11:1265779 | Cpe07g00385 | Cpe-Chr7:2483126 | 4.01E-132 | wgd | |
| Cpe15g00559 | Cpe-Chr15:6419234 | Cpe07g00385 | Cpe-Chr7:2483126 | 3.88E-50 | wgd | |
| Cpe16g00269 | Cpe-Chr16:4700975 | Cpe07g00385 | Cpe-Chr7:2483126 | 3.25E-47 | wgd | |
| Cpe02g00094 | Cpe-Chr2:475486 | Cpe07g00385 | Cpe-Chr7:2483126 | 9.58E-59 | wgd | |
| Cpe04g00107 | Cpe-Chr4:966757 | Cpe07g00385 | Cpe-Chr7:2483126 | 8.45E-55 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49734 | PF00643 | zf-B_box | 1.40E-05 | No_clan | Cpe | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe07g00385 | - | - | mcha:111013937 | 476.478 |