Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00385 ATGAAGATTCAGTGTGATGTCTGTGAAAAAGGCGATGCGTCAGTGTTCTGCACGGCGGATGAGGCGGCGCTTTGTAATATCTGTGACCATCGTGTCCACCATGCCAATAAGCTCGCTTCGAAGCACCGCCGCTTCTCTCTGCTCCGCTCTGCTGCAGCGGAGGCACCTGTCTGCGATGTGTGCCGGGAGCGGCGAGGGTTCTTGTTTTGTCAACAGGATAGAGCGATTCTGTGTAGAGAGTGCGATGATCCAATTCATTCGGCTAATGAACTCACTATGAAACACGATAGGTTTCTTCTGACTGGGATTAAGCTTTCCACCACCGCTGCTCTGTACGCGCCGCCTCCCTCCGACGAGAAACCGATCAAAACTGGTCATCGTACTGGTTTTGATCACAAATCAAAGGGTTCAGTCAAGAAACCAACCGCTGTTCCTGCTGCTCCAGTAGGATGCACATCAAGTGTTTGTGTTAATGCCTCAACCAACATACCTCCGGCAGTAGCCATGAACAAGGGCGGCGGAGGTCAGATTCCGACAGGAGGCGGTGGCTCAGCCAGTAGCATATCGGAATATTTGATGGAGACACTTCCTGGGTGGCACTTTGAGGATTTACTCGATTCCTCTGTTCCTCCCCCTTTTATGGAGTGTGAAGGGTTGGGATTACCATTTGTGGAAGGTGATTTCAACAGTGGCCTTTCACCATCGGAGCGTTTGGAGCTTTGGGTCCCTCAGGGGCCGATGTATGGTTCAGGTTTGATGATGAACAGTGGGGTGAAGGACACAAAGGATTTGGTAGTAAACTCATCAAAAGTCAATAGAGCTTGGACAGATGATTGTTTCACTGTTCCTCAGATCACAAGTACAACAGCCCCATCTGCAGGCTTTAAGCGATCCAGATCTTTTTGGTATAACAATCACTAA 921 49.73 MKIQCDVCEKGDASVFCTADEAALCNICDHRVHHANKLASKHRRFSLLRSAAAEAPVCDVCRERRGFLFCQQDRAILCRECDDPIHSANELTMKHDRFLLTGIKLSTTAALYAPPPSDEKPIKTGHRTGFDHKSKGSVKKPTAVPAAPVGCTSSVCVNASTNIPPAVAMNKGGGGQIPTGGGGSASSISEYLMETLPGWHFEDLLDSSVPPPFMECEGLGLPFVEGDFNSGLSPSERLELWVPQGPMYGSGLMMNSGVKDTKDLVVNSSKVNRAWTDDCFTVPQITSTTAPSAGFKRSRSFWYNNH 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2483126 2484571 - Cp4.1LG07g03880.1 Cpe07g00385 472192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00385 306 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cpe07g00385 306 CDD Bbox1_BBX-like 57 100 - -
Cpe07g00385 306 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270
Cpe07g00385 306 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Cpe07g00385 306 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cpe07g00385 306 SMART bboxneu5 53 100 IPR000315 GO:0008270
Cpe07g00385 306 CDD Bbox1_BBX-like 5 47 - -
Cpe07g00385 306 Gene3D Classic Zinc Finger 1 94 - -
Cpe07g00385 306 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 300 - -
Cpe07g00385 306 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00385 - - - mcha:111013937 476.478
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00094 Cpe07g00385 CCT
Cpe07g00385 Cpe11g00234 CCT
Cpe02g00094 Cpe07g00385 ECH
Cpe07g00385 Cpe11g00234 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00595 Cpe-Chr1:3434320 Cpe07g00385 Cpe-Chr7:2483126 1.44E-37 dispersed
Cpe07g00385 Cpe-Chr7:2483126 Cpe17g01088 Cpe-Chr17:8252826 7.82E-37 dispersed
Cpe11g00234 Cpe-Chr11:1265779 Cpe07g00385 Cpe-Chr7:2483126 4.01E-132 wgd
Cpe15g00559 Cpe-Chr15:6419234 Cpe07g00385 Cpe-Chr7:2483126 3.88E-50 wgd
Cpe16g00269 Cpe-Chr16:4700975 Cpe07g00385 Cpe-Chr7:2483126 3.25E-47 wgd
Cpe02g00094 Cpe-Chr2:475486 Cpe07g00385 Cpe-Chr7:2483126 9.58E-59 wgd
Cpe04g00107 Cpe-Chr4:966757 Cpe07g00385 Cpe-Chr7:2483126 8.45E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1041 Blo01g01583 . Bda01g00506 . Bpe02g00365 . . . Cmo05g00289 Cmo12g00380 Cma01g01945 . Car01g01519 Car12g00406 . . Cpe07g00385 Bhi04g00162 . . . . . . Cla08g01445 Cam08g1926 Cec08g1501 Cco08g1638 Clacu08g1616 . Cre08g1403 Cone4ag1948 . Cone17ag1378 Cone20ag0105 . . . Cme03g01907 . Blo18g00789 Bda08g01236 Bda01g01521 Bpe02g01717 Bpe05g00126 Bma01g00739 Bma05g00152 . Cmo01g02006 . Cma12g00429 Cma05g00283 . . Cpe11g00234 Cpe02g00094 . . . . . . . Cla11g00377 Cam11g0424 Cec11g0420 Cco11g0413 Clacu11g0546 Cmu11g0403 Cre11g0890 Lsi08g01348 Csa02g02104 Chy03g01411 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g00334 CCT 6 333 C2C2-CO-like Transcription Factor Family AT5G15850 50.1 8.4e-45 178.3
Cpe07g00334 CCT 4 333 C2C2-CO-like Transcription Factor Family AT3G02380 50.6 7.7e-43 171.8
Cpe11g00283 CCT 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.1 2.1e-83 306.6
Cpe07g00334 CCT 1 333 C2C2-CO-like Transcription Factor Family AT5G24930 58.9 6.5e-77 285.0
Cpe04g01287 CCT,CST 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 51.3 6.7e-58 221.9
Cpe18g00605 CCT,CST 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.4 4.8e-56 215.7
Cpe04g01287 CCT,CST 5 371 C2C2-CO-like Transcription Factor Family AT5G57660 50.1 2.8e-64 243.0
Cpe05g01383 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 5.8e-89 325.1
Cpe15g00673 CCT,CST 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 3.2e-87 319.3
Cpe04g00659 CCT,CST 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 53.4 2.7e-86 316.2
Cpe16g00362 CST 25 293 C2C2-CO-like Transcription Factor Family AT3G07650 50.5 6.7e-53 205.3
Cpe05g01383 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.4e-87 320.5
Cpe15g00673 CCT,CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 1.1e-84 310.8
Cpe04g00659 CCT,CST 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.6e-84 308.5
Cpe16g00362 CST 88 293 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 1.5e-49 194.1
Cpe05g01383 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.4e-87 320.5
Cpe15g00673 CCT,CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 1.1e-84 310.8
Cpe04g00659 CCT,CST 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.6e-84 308.5
Cpe16g00362 CST 88 293 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 1.5e-49 194.1
Cpe04g00107 CCT,CST,ECH 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 57.6 2.7e-53 206.5
Cpe15g00559 CCT,CST,ECH 1 206 C2C2-CO-like Transcription Factor Family AT1G75540 52.9 1.2e-48 191.0
Cpe01g00595 CST 1 203 C2C2-CO-like Transcription Factor Family AT1G78600 55.2 5.0e-57 218.8
Cpe01g00702 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 1.5e-55 213.0
Cpe14g00516 . 1 193 C2C2-CO-like Transcription Factor Family AT2G21320 58.5 1.1e-53 206.8
Cpe19g00845 CST 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 69.7 4.6e-49 191.4
Cpe10g00649 CST 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 8.8e-48 187.2
Cpe01g00702 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 3.2e-56 215.3
Cpe14g00516 . 1 192 C2C2-CO-like Transcription Factor Family AT4G38960 61.5 2.7e-55 212.2
Cpe19g00845 CST 1 151 C2C2-CO-like Transcription Factor Family AT4G38960 66.9 1.5e-50 196.4
Cpe10g00649 CST 1 106 C2C2-CO-like Transcription Factor Family AT4G38960 82.1 3.2e-48 188.7
Cpe04g00107 CCT,CST,ECH 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 1.4e-54 210.3
Cpe15g00559 CCT,CST,ECH 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 55.6 5.9e-50 194.9
Cpe07g00385 CCT,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.0 1.7e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004397 2 1 1 2 2 1 1 2 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 2 3 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49734 PF00643 zf-B_box 1.40E-05 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00385 Cpe_Chr07 FPKM 42.199741 44.829536 46.194565 47.937 48.52536 56.774986 44.518513 59.284996 61.54689 54.078671