Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00386 ATGGATGGCAAAAAAATGGCTGAATTGTTCTATGTAGGAGGAAGAGAAGAAGGCCCACCAAACAAAGAACAACAACACAAACAAACACAACCCACCTTGTTTATGTACCGAAACGACCAACAAATCCACCACAAAGGCTTCGAAATATGGCCTCCACATTACCAAACCCACTTCTCCTCCGCCGTTGGTCAGAGCCGCCGCACCGACTCCGATCACCCCTCCAGATCCGCCTTCACCGCCACCAGACCCGCCGCAGCCACTGCCGGAGGCATCAATTGCCAAGACTGTGGCAACCAAGCCAAGAAGGATTGTGCTTATTTGCGGTGTAGGACTTGCTGTAAGAGCCGAGGGTTTCACTGCCAGACTCACGTGAAGAGCACGTGGGTTCCGGCTGCTAAACGCCGTGAACGGCAGTTTTGTGGTGGGGATAATTCCAAACGACTTAGAGAAACCCAATCCGCCACCGCCACAGCCACCGCCACCCCTCGTTTGCCCGCCTCCTTCACCTCAGAATTGGAGAAATTTCCATCGGAAGTGAACTCACCGGCGGTGTTTCGGTGTGTGAAAGTAAGCGCGATGGACGATGAGGATGAAGAGTTTGCATATCAGACGGCTGTGAATATCGGAGGCCACGTGTTCAAAGGAATTCTCTACGATCAAGGCTCTGAAGTCCATTACACCGCCGGCGAGAGCTCCTCCGGCCACGGAGGAGATGGATCAGTACACCCACTTAACTTAATTGCTGGACCCTCCAACCTCGCCGCCGCTTCCACCACTACCTCGGCTGCAACCAGCTCCAACCCCACCGCCGCCGTCGCGCCGTTGCTTGACCCTTCTATATATCCAGCTCCTCTTAATGCATTTATGGCTGGTACGCAGTTCTTCCCACCCTCTAGATCATGA 903 53.82 MDGKKMAELFYVGGREEGPPNKEQQHKQTQPTLFMYRNDQQIHHKGFEIWPPHYQTHFSSAVGQSRRTDSDHPSRSAFTATRPAAATAGGINCQDCGNQAKKDCAYLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQFCGGDNSKRLRETQSATATATATPRLPASFTSELEKFPSEVNSPAVFRCVKVSAMDDEDEEFAYQTAVNIGGHVFKGILYDQGSEVHYTAGESSSGHGGDGSVHPLNLIAGPSNLAAASTTTSAATSSNPTAAVAPLLDPSIYPAPLNAFMAGTQFFPPSRS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2494578 2495574 + Cp4.1LG07g03780.1 Cpe07g00386 472193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00386 300 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 174 221 IPR006511 -
Cpe07g00386 300 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 6 297 IPR007818 GO:0003700|GO:0006355
Cpe07g00386 300 MobiDBLite consensus disorder prediction 61 82 - -
Cpe07g00386 300 Pfam Domain of unknown function (DUF702) 90 223 - -
Cpe07g00386 300 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 92 134 IPR006510 -
Cpe07g00386 300 MobiDBLite consensus disorder prediction 142 161 - -
Cpe07g00386 300 PANTHER PROTEIN SHI RELATED SEQUENCE 7 6 297 - -
Cpe07g00386 300 MobiDBLite consensus disorder prediction 145 161 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00098 Cpe07g00386 CCT
Cpe07g00386 Cpe11g00233 CCT
Cpe02g00098 Cpe07g00386 ECH
Cpe07g00386 Cpe11g00233 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00386 Cpe-Chr7:2494578 Cpe15g00256 Cpe-Chr15:2450606 5.94E-76 dispersed
Cpe10g00646 Cpe-Chr10:3722467 Cpe07g00386 Cpe-Chr7:2494578 1.10E-31 wgd
Cpe11g00233 Cpe-Chr11:1258703 Cpe07g00386 Cpe-Chr7:2494578 3.48E-129 wgd
Cpe19g00837 Cpe-Chr19:6224497 Cpe07g00386 Cpe-Chr7:2494578 5.75E-73 wgd
Cpe02g00098 Cpe-Chr2:491049 Cpe07g00386 Cpe-Chr7:2494578 6.08E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49735 PF05142 DUF702 5.60E-56 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00386 - - cmos:111454480 545.043