Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00388 ATGGAGCGCCTCACTGTAATCGCTCTCTCGTTTGCCATTTTACTATCGGCGACGGTAGCGTACGGCGAATCTTCCGACCAAATCAACGGCGCCGAAGACGACGATCTACTGATTCGTCAAGTCGTATCCGGAGCCGATGATCGTCTCTTAACAGCGGAGCAACACTTCCAGAACTTCAAACTGAAGTTTGGAAAGACCTACGCTACCGATGAGGAGCACGATTACAGGCTCCGTATCTTCAAGGCTAATCTCCGCAAAGCCAAGCGCCACCAGAAGCTCGATCCTGGCGCCGTCCATGGCGTTACTCAGTTCTCCGATCTCACTGAGGACGAGTTCCGTAAAAATTTCGTTGGAGTAAATCGGCTCCGTCTTCCTGCCGATGCTCAGAAGGCGCCGATCCTTCCTACCGATAACCTAGCCTCCGACTTCGATTGGCGCGACCACGGTGCCGTCACGCCGGTCAAAAATCAGGGTTCTTGTGGTTCGTGCTGGTCTTTTAGCGCTGTTGGAGCGCTAGAGGGAGCTAATTTCTTGTCAACTGGAAATCTTGTTAGTTTGAGCGAGCAACAGCTTGTGGATTGTGATCATGAGTGTGATCCTGAGGAAGCTGGTGCATGCGACGCGGGGTGCAACGGGGGGCTAATGAACTCAGCTTTCGAGTACATTTTGAAAGCAGGTGGATTAGAGAGAGAGGAGGACTATCCTTACACTGGAAAGGATCGTGGCCCTTGCAAATTCCAAAATGCCAAAATCGCAGCCTCTGTATCTAACTTCAGTGTCATTTCTCTTGATGCCGACCAAATTGCAGCAAACTTGCTCAAGAATGGTCCTTTAGCAATTGGAATCAATGCGGCTTTCATGCAGACATACATGAAGGGAGTTTCGTGCCCATACATATGCTCTAAACGAAACCTAAATCATGGAGTACTGCTTGTAGGGTATGGATCTGCAGGCTATGCTCCGATACGGTTCAAGGAGAAGCCCTACTGGATCATAAAGAATTCCTGGGGAGAAAATTGGGGAGAAAATGGGTACTACTTAATCTGCAAGGGCAAAAATATCTGTGGAGTCGAGTCGATGGTCTCGTCTGTGGCTGCTGCTACCCAAAACTGA 1113 49.69 MERLTVIALSFAILLSATVAYGESSDQINGAEDDDLLIRQVVSGADDRLLTAEQHFQNFKLKFGKTYATDEEHDYRLRIFKANLRKAKRHQKLDPGAVHGVTQFSDLTEDEFRKNFVGVNRLRLPADAQKAPILPTDNLASDFDWRDHGAVTPVKNQGSCGSCWSFSAVGALEGANFLSTGNLVSLSEQQLVDCDHECDPEEAGACDAGCNGGLMNSAFEYILKAGGLEREEDYPYTGKDRGPCKFQNAKIAASVSNFSVISLDADQIAANLLKNGPLAIGINAAFMQTYMKGVSCPYICSKRNLNHGVLLVGYGSAGYAPIRFKEKPYWIIKNSWGENWGENGYYLICKGKNICGVESMVSSVAAATQN 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2512563 2515475 - Cp4.1LG07g03900.1 Cpe07g00388 472195

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00388 370 Pfam Papain family cysteine protease 140 363 IPR000668 GO:0006508|GO:0008234
Cpe07g00388 370 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 157 168 IPR000169 -
Cpe07g00388 370 SMART pept_c1 139 365 IPR000668 GO:0006508|GO:0008234
Cpe07g00388 370 Pfam Cathepsin propeptide inhibitor domain (I29) 56 112 IPR013201 -
Cpe07g00388 370 Gene3D Cysteine proteinases 30 365 - -
Cpe07g00388 370 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 329 348 IPR025661 -
Cpe07g00388 370 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 305 315 IPR025660 -
Cpe07g00388 370 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 33 365 - -
Cpe07g00388 370 CDD Peptidase_C1A 143 364 IPR039417 -
Cpe07g00388 370 PANTHER CYSTEINE PROTEASE RD19C-RELATED 33 365 - -
Cpe07g00388 370 SUPERFAMILY Cysteine proteinases 52 363 IPR038765 -
Cpe07g00388 370 SMART Inhibitor_I29_2 56 112 IPR013201 -
Cpe07g00388 370 PRINTS Papain cysteine protease (C1) family signature 157 172 IPR000668 GO:0006508|GO:0008234
Cpe07g00388 370 PRINTS Papain cysteine protease (C1) family signature 307 317 IPR000668 GO:0006508|GO:0008234
Cpe07g00388 370 PRINTS Papain cysteine protease (C1) family signature 329 335 IPR000668 GO:0006508|GO:0008234
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00388 K01373 CTSF; cathepsin F [EC:3.4.22.41] - csv:101210316 667.537
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00388 Cpe-Chr7:2512563 Cpe18g00319 Cpe-Chr18:4706602 8.20E-65 dispersed
Cpe11g00230 Cpe-Chr11:1234365 Cpe07g00388 Cpe-Chr7:2512563 1.71E-14 wgd
Cpe15g00554 Cpe-Chr15:6384946 Cpe07g00388 Cpe-Chr7:2512563 5.98E-109 wgd
Cpe16g00268 Cpe-Chr16:4685027 Cpe07g00388 Cpe-Chr7:2512563 0 wgd
Cpe04g00113 Cpe-Chr4:1014887 Cpe07g00388 Cpe-Chr7:2512563 0 wgd
Cpe05g01284 Cpe-Chr5:8955517 Cpe07g00388 Cpe-Chr7:2512563 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1031 . . . . . . . . . Cmo12g00384 . . . Car12g00409 . . Cpe07g00388 . . . . . . . Cla08g01449 Cam08g1934 Cec08g1508 Cco08g1647 Clacu08g1624 . Cre08g1410 . . Cone17ag1374 Cone20ag0108 . . . Cme03g01910 Blo17g00766 . . . . . . Bma05g00147 . . . Cma12g00432 . . . . . . . . . . . . . . . . . . . Lsi08g01353 Csa02g02101 Chy03g01414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00388 Cpe_Chr07 FPKM 14.802267 16.805141 24.469725 24.139458 22.297449 20.20442 20.44458 13.763944 14.453797 15.005074