Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00392 ATGTTGAATCCACGAGCCAAGCAACAGCAGCAGCTCAAAAGGGCCTCCTCTTCTGCCCATCCCAGCTCAAGAAAGGGCTGTATGAGAGGCAAAGGAGGCCCTGAAAACGCTTCCTGCACTTACAAAGGTGTCCGTCAAAGAACTTGGGGCAAATGGGTTGCTGAGATTCGTGAGCCTAATCGTGGGGCTCGTCTTTGGCTTGGCACTTTTGATACCTCTCATGATGCTGCCATGGCTTATGACAATGCCGCTCGTCGCCTCTATGGCTCTGACGCCAAGCTCAATCTTCCTTCCTCTGCTGCAGAGCCTGAGAAGTCTGTAGTAAACAATGGCGGGATGGGGTTTGGGGAGGAGGACGAAAATGGTGGGCTTTGGAGGTCTATGAGTATTAGCTTAGATGATTCCATTTGGGTTGATGCAGCCATGTCTTTGGATTTCCCTGTCATGGAAGATCAAAGCCTTTTGGCTGCGAATTTGGTGGATGGAAATGGCTGGGACACACTACAATGGTGCTTATGA 519 50.48 MLNPRAKQQQQLKRASSSAHPSSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAAMAYDNAARRLYGSDAKLNLPSSAAEPEKSVVNNGGMGFGEEDENGGLWRSMSISLDDSIWVDAAMSLDFPVMEDQSLLAANLVDGNGWDTLQWCL 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2537568 2538086 - Cp4.1LG07g03870.1 Cpe07g00392 472199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00392 172 CDD AP2 39 99 IPR001471 GO:0003700|GO:0006355
Cpe07g00392 172 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Cpe07g00392 172 Gene3D AP2/ERF domain 40 98 IPR036955 GO:0003700|GO:0006355
Cpe07g00392 172 Pfam AP2 domain 40 89 IPR001471 GO:0003700|GO:0006355
Cpe07g00392 172 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 108 155 - -
Cpe07g00392 172 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 18 103 - -
Cpe07g00392 172 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Cpe07g00392 172 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Cpe07g00392 172 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Cpe07g00392 172 MobiDBLite consensus disorder prediction 1 23 - -
Cpe07g00392 172 MobiDBLite consensus disorder prediction 1 39 - -
Cpe07g00392 172 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 18 103 - -
Cpe07g00392 172 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 108 155 - -
Cpe07g00392 172 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00392 Cpe11g00227 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00392 Cpe-Chr7:2537568 Cpe08g01382 Cpe-Chr8:9925491 1.15E-33 dispersed
Cpe11g00227 Cpe-Chr11:1215130 Cpe07g00392 Cpe-Chr7:2537568 8.66E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49736 PF00847 AP2 1.60E-14 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00392 - - cmos:111454192 353.599