Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00393 ATGGCCAATCTCAGTTTCCATTTTGTGATTACCTTTCTCTTTCTTCTTCGCCATTTTTCTGCTACTTCGGATATTTCGGAGCTCTTCGAAATCTGGTGCACAGAACATGGAAAATCGTATTCCTCCGCGGAAGAAAAGCTATACAGACTCGGTGTTTTTGCCGATAACTATGAATTTGTTACTCATCACAATAATCAGGAAAATTCTTCTTATACTCTTTCTCTCAATGCTTATGCCGATATTACTCACCATGAGTTCAAGGCCGCTCGCTTGGGTCTTTCCTCTGCTTTGCGGAGCTCGCGGCCGGTTTCGCCGCAAGAACCCTATCTTCATCGGGATGTTCCTGAATCGTTAGATTGGAGGAAGAAAGGGGCGGTGACTGCTGTTAAGGATCAAGGAAGTTGTGGTGCTTGTTGGTCTTTCTCAGCAACAGGAGCTATTGAAGGGATTAACCAGATTAGAACAGGGTCTCTTATCAGTGTTTCTGAACAGGAATTAATTGATTGTGACAGATCGTATAATTCTGGCTGTGGAGGAGGACTGATGGATTATGCATACCAATTTGTGATAAAAAACCATGGGATCGACACCGAAGATGATTATCCTTTTCAGGGTCGTGATGGATCGTGTCGTAAGGACAAGCTAAATAGGAAGGTCGTTACCATTGATGGCTATTCTGACGTTCCTCCAAACAATGAGGAAAAATTACTGCAAGCAGTAGCAATTCAACCTGTGAGTGTTGGTATCTGTGGCAGTGAGAGAGCTTTTCAATTATATTCAAAGGGAATTTTCTCTGGTCCATGTTCAACTTCCTTGGATCATGCTGTGTTGATTGTAGGATATGGATCAGAAAATGGTGTTGATTATTGGATCGTGAAGAACTCGTGGGGTAAACGTTGGGGAATGGATGGTTATATTCATATGCAGCGCAACAGCGGAAATTCTGAAGGCGTTTGCGGAATCAACATGCTTGCTTCATATCCAACTAAAACGAGTCCCAACCCACCTCCCTCCCCTCCTCCAGGTCCAACAAAATGCAGTTTTCTTACTAGCTGCGCTGCTGGGGAGACCTGTTGTTGTGCGAAGGAATTTTTTGGCCTTTGCTTGTCTTGGAAATGCTGTGGACTGAGCTCTGCTGTCTGTTGCAAGGACGGTCGTCATTGTTGCCCCTTTGATTATCCCATTTGTGATACTCAGAGGAACCTATGCCTCAAGTCATTAGCTTTCTGCTATGGTTCTAGAGCTTCCATGGAT 1254 44.1 MANLSFHFVITFLFLLRHFSATSDISELFEIWCTEHGKSYSSAEEKLYRLGVFADNYEFVTHHNNQENSSYTLSLNAYADITHHEFKAARLGLSSALRSSRPVSPQEPYLHRDVPESLDWRKKGAVTAVKDQGSCGACWSFSATGAIEGINQIRTGSLISVSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEDDYPFQGRDGSCRKDKLNRKVVTIDGYSDVPPNNEEKLLQAVAIQPVSVGICGSERAFQLYSKGIFSGPCSTSLDHAVLIVGYGSENGVDYWIVKNSWGKRWGMDGYIHMQRNSGNSEGVCGINMLASYPTKTSPNPPPSPPPGPTKCSFLTSCAAGETCCCAKEFFGLCLSWKCCGLSSAVCCKDGRHCCPFDYPICDTQRNLCLKSLAFCYGSRASMD 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2540050 2545273 + Cp4.1LG07g03960.1 Cpe07g00393 472200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00393 418 Gene3D Cysteine proteinases 13 331 - -
Cpe07g00393 418 CDD Peptidase_C1A 115 328 IPR039417 -
Cpe07g00393 418 Gene3D Granulin 343 407 IPR037277 -
Cpe07g00393 418 PANTHER OS05G0508300 PROTEIN 15 359 - -
Cpe07g00393 418 Pfam Granulin 357 404 IPR000118 -
Cpe07g00393 418 PRINTS Papain cysteine protease (C1) family signature 274 284 IPR000668 GO:0006508|GO:0008234
Cpe07g00393 418 PRINTS Papain cysteine protease (C1) family signature 132 147 IPR000668 GO:0006508|GO:0008234
Cpe07g00393 418 PRINTS Papain cysteine protease (C1) family signature 289 295 IPR000668 GO:0006508|GO:0008234
Cpe07g00393 418 SMART GRAN_2 346 403 IPR000118 -
Cpe07g00393 418 Pfam Papain family cysteine protease 114 328 IPR000668 GO:0006508|GO:0008234
Cpe07g00393 418 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 272 282 IPR025660 -
Cpe07g00393 418 SUPERFAMILY Cysteine proteinases 25 329 IPR038765 -
Cpe07g00393 418 SUPERFAMILY Granulin repeat 343 376 - -
Cpe07g00393 418 SMART pept_c1 114 329 IPR000668 GO:0006508|GO:0008234
Cpe07g00393 418 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 15 359 - -
Cpe07g00393 418 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 132 143 IPR000169 -
Cpe07g00393 418 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 289 308 IPR025661 -
Cpe07g00393 418 SMART Inhibitor_I29_2 29 86 IPR013201 -
Cpe07g00393 418 Pfam Cathepsin propeptide inhibitor domain (I29) 29 86 IPR013201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00393 - - - csv:101211052 738.413
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00195 Cpe-Chr2:1015211 Cpe07g00393 Cpe-Chr7:2540050 1.24E-137 dispersed
Cpe06g00176 Cpe-Chr6:956019 Cpe07g00393 Cpe-Chr7:2540050 6.21E-137 dispersed
Cpe07g00393 Cpe-Chr7:2540050 Cpe19g00637 Cpe-Chr19:5160213 1.84E-125 dispersed
Cpe07g00393 Cpe-Chr7:2540050 Cpe04g00295 Cpe-Chr4:3733287 5.34E-145 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1019 . . . . . . . . . Cmo12g00389 . . . Car12g00414 Sed05g2303 . Cpe07g00393 Bhi04g00211 Tan02g0772 Cmetu01g1870 . Hepe02g0484 . . Cla08g01454 Cam08g1939 Cec08g1513 Cco08g1652 Clacu08g1629 . Cre08g1415 . . . . . . . Cme03g01917 . Blo18g00796 . . . . . . . . . Cma12g00438 . . . . . . . . . . . . . . . . . . . Lsi08g01359 Csa02g02095 Chy03g01420 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011861 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00393 Cpe_Chr07 FPKM 0.893148 0.050668 1.162956 0.703379 0.393367 0.0 0.131984 0.269061 0.0 0.187714