Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00394 ATGGCTGTTGAAGGTCAAGTGATTTCACTTCGCGATGCTAAAGAATTCGATTCGATAGTCGATAAAGAGAAGGAATCTGGCAAACTGATTGTGATCGATTTTACTGCTTCCTGGTGCCCGCCATGCCGTTTCATTGCTCCAGTATTCGCAGAGTTGGCTAAGGCGCACGTCAATGTCACTTTCTTGAAAGTGGACGTCGATAATGTCAAGGAAATTGCTGAGAAGTTCGAGGTGACAGCGATGCCGACCTTTGTTTTCCTGAAAGGAGGAAACGAAGTTCACAGGATTGTTGGTGCCGACAAGGTGGAGCTTGGGGTTAAAGTACTGGAACTTTCCGCAAGAAAGCGATTTCTGTTTATTCCAATGGCTGAAGAAGGGCAAGTGATCGCATGCCATAAGAAAGCTGAGTGGGATGCTCATTTAGCGAAAGCGAAGGAATCTGGAAAACTGATTGTTGTGGATTTTACTGCTTCCTGGTGCGGGCCATGCCGTGCAATTGCTCCATATTTCTCAGAATTGGCTAAGAATCATCCCGGTGTCGTTTTCCTGAAAGTGGACGTCGATGAATTGAACACTGTTGCTACCGAGTGGGAGATCAACGCAATGCCGACATTTGTTTTCATGAAACGAGGGGAAACAGTTCACAAGATTGTTGGTGCTGATAAATCGGCGCTGTTGAAAAAAATAGAAGAGCTCAAGACTCCAACTGCTGCTACTACTTCTACTGCTTAG 732 45.63 MAVEGQVISLRDAKEFDSIVDKEKESGKLIVIDFTASWCPPCRFIAPVFAELAKAHVNVTFLKVDVDNVKEIAEKFEVTAMPTFVFLKGGNEVHRIVGADKVELGVKVLELSARKRFLFIPMAEEGQVIACHKKAEWDAHLAKAKESGKLIVVDFTASWCGPCRAIAPYFSELAKNHPGVVFLKVDVDELNTVATEWEINAMPTFVFMKRGETVHKIVGADKSALLKKIEELKTPTAATTSTA 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2546677 2551111 + Cp4.1LG07g03990.1 Cpe07g00394 472201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00394 243 SUPERFAMILY Thioredoxin-like 125 233 IPR036249 -
Cpe07g00394 243 PANTHER THIOREDOXIN 1 112 - -
Cpe07g00394 243 ProSitePatterns Thioredoxin family active site. 31 49 IPR017937 -
Cpe07g00394 243 PANTHER THIOREDOXIN 122 235 - -
Cpe07g00394 243 PANTHER THIOREDOXIN 122 235 - -
Cpe07g00394 243 PANTHER THIOREDOXIN 1 112 - -
Cpe07g00394 243 CDD TRX_family 139 230 - -
Cpe07g00394 243 Gene3D Glutaredoxin 121 238 - -
Cpe07g00394 243 Gene3D Glutaredoxin 1 115 - -
Cpe07g00394 243 PRINTS Thioredoxin family signature 159 168 - -
Cpe07g00394 243 PRINTS Thioredoxin family signature 198 209 - -
Cpe07g00394 243 PRINTS Thioredoxin family signature 151 159 - -
Cpe07g00394 243 ProSitePatterns Thioredoxin family active site. 152 170 IPR017937 -
Cpe07g00394 243 Pfam Thioredoxin 12 101 IPR013766 -
Cpe07g00394 243 Pfam Thioredoxin 130 230 IPR013766 -
Cpe07g00394 243 ProSiteProfiles Thioredoxin domain profile. 108 234 IPR013766 -
Cpe07g00394 243 ProSiteProfiles Thioredoxin domain profile. 1 103 IPR013766 -
Cpe07g00394 243 CDD TRX_family 14 103 - -
Cpe07g00394 243 SUPERFAMILY Thioredoxin-like 4 103 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00394 K03671 trxA; thioredoxin 1 - hbr:110664111 214.927
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00394 Cpe11g00225 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02471 Cpe-Chr1:20428586 Cpe07g00394 Cpe-Chr7:2546677 1.87E-22 dispersed
Cpe06g00743 Cpe-Chr6:4663053 Cpe07g00394 Cpe-Chr7:2546677 1.21E-24 dispersed
Cpe07g00394 Cpe-Chr7:2546677 Cpe11g00226 Cpe-Chr11:1212049 4.48E-45 dispersed
Cpe09g00883 Cpe-Chr9:8067570 Cpe07g00394 Cpe-Chr7:2546677 2.83E-24 dispersed
Cpe14g00681 Cpe-Chr14:4473832 Cpe07g00394 Cpe-Chr7:2546677 3.36E-11 dispersed
Cpe19g00158 Cpe-Chr19:1280162 Cpe07g00394 Cpe-Chr7:2546677 3.45E-12 dispersed
Cpe07g00342 Cpe-Chr7:2226084 Cpe07g00394 Cpe-Chr7:2546677 6.21E-08 transposed
Cpe07g00483 Cpe-Chr7:3135639 Cpe07g00394 Cpe-Chr7:2546677 2.91E-09 transposed
Cpe10g00021 Cpe-Chr10:154362 Cpe07g00394 Cpe-Chr7:2546677 2.12E-09 transposed
Cpe10g00643 Cpe-Chr10:3704531 Cpe07g00394 Cpe-Chr7:2546677 1.11E-29 wgd
Cpe11g00225 Cpe-Chr11:1208177 Cpe07g00394 Cpe-Chr7:2546677 1.96E-34 wgd
Cpe19g00834 Cpe-Chr19:6208021 Cpe07g00394 Cpe-Chr7:2546677 2.99E-28 wgd
Cpe02g00101 Cpe-Chr2:505349 Cpe07g00394 Cpe-Chr7:2546677 1.91E-31 wgd
Cpe06g00089 Cpe-Chr6:438847 Cpe07g00394 Cpe-Chr7:2546677 1.56E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1015 . . . . . . . . Cmo05g00277 Cmo12g00390 . . . Car12g00416 . . Cpe07g00394 Bhi04g00209 . . . Hepe10g0604 . . Cla08g01456 Cam08g1941 Cec08g1515 Cco08g1654 Clacu08g1631 . Cre08g1417 . . . . . . Chy04g00470 Cme03g01919 . . . . . . . . . . . Cma12g00439 . Car05g00225 . Cpe11g00225 . . . . . . . . . . . . . . . Lsi08g01362 Csa02g02092 Chy03g01423 Cme04g00516
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002761 0 2 0 0 0 2 4 2 2 2 2 2 3 2 2 3 2 0 3 2 3 1 3 2 2 3 2 2 3 0 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00394 Cpe_Chr07 FPKM 0.0 0.0 0.200524 0.168896 0.313731 0.0 0.068921 1.45752 0.947082 0.995644