Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00395 ATGATCCGAGGACACTACGGTAGCTTTGTGTCATATGACCAAATTTTCGTTCAATCCCTGACATTTATGAGCAACAAAAGGAAGTATGGACCTTATGGGGTCGAACTCGGAAGAGTTTTCTCATTCCCAACGACCGAGGGCAAGCTTGTCGGGTTCCATGGCAGGAGTGGATTGTACTTGGATGCCATTGGAGTTTACCTGAAGCCTATGCCAATACAAACGCCATCTAAAGCAATTATTCAATCACAGAGTTATGTTGCTTCTAAGACAGAAAGTGAAGGCTATTCAATTATACAAGGAAGTGTTGGCCAAAATTATGATATTGTTCTTGCTGTAAAGCAGAAGGATGAACTCAAAAAGCCCCTTCCATCAAGCTCCTCAAGCTCAGAATCAAGTGATGATGAATCCATAACCAAGAGGCCTGTTAAGAAAGGACCTTCTAAAGCTGAAAATGTTGTGCCATGTGGACCCTGGGGTGGCTCAGGAGGAACTGCATTTGATGATGGATGTTACACTGGCGTTAGACAAATTAATATATCGCGCAATGTCGGGATCGTTATCTTCGACTATCCATACGAAATCTTGACTCATGTGACTGGACACTATGGTCCTGTAATGTACATGGGACCTAACGTTATCAAGTCACTTACATTCCATACTACAAAAGCTAAGTACGGACCATTTGGGGAGGCACAAGGAACCCCTTTCAGTACCAACGTCAAGGAGGGGAAGATTGTTGGATTTCATGGCAGGAAAGGTCTGTTCCTCGATGCACTCGGTGTGCACATAGTAGAAGGAAAGGTGACCCCGGCGTCTCGTCCTCCGTCCAGTGATATCGTTCCTGCTACACAACCACTTCTCGAAAACGAGAGCGCCCATTGGACTAAGAAACTTGCTCCTTCAAACGGAAGACCACTTGAAGAGATGGCTCGTGTAGTAAAAGAACCAGCTCCCTGTGGACCGGGACCGTGGGGCGGGGATGGAGGGAAACCGTGGGACGACGGAGTGTTTTCTGGCATTAAACAAATATACTTGACCAAATCTCTTGAAGCTTTTTGTTCAATCCAAATTGAATATGATCGAAACAAGCAATCAGTTTGGTCAGTTAAGCATGGAGGAAACGGTGGAACGACCGTGCATCGGGTAAAACTAGATTATCCGCATGAAGTGTTGACTTGTATCTCGGGATATTACGGTTATGTCGGTAAAGATGAACGACAACAAGTTATAAAGTCGCTTACTTTACACACAAGTAGGGGGAAGTTCGGACCGTTCGGGGAGGAGATAGGAACCTTTTTCACGTCGACGATAACCGAGGGGAAGGTGGTTGGCTTCCATGGGAGGAGCAGCTTGTACTTGGACGCCATTGGAGTTCACATGCAGCACTGGCTAGGTAGCCAAAGATCATCCAAGTCGTCCATGTTTAAACTGTTCTGA 1437 45.79 MIRGHYGSFVSYDQIFVQSLTFMSNKRKYGPYGVELGRVFSFPTTEGKLVGFHGRSGLYLDAIGVYLKPMPIQTPSKAIIQSQSYVASKTESEGYSIIQGSVGQNYDIVLAVKQKDELKKPLPSSSSSSESSDDESITKRPVKKGPSKAENVVPCGPWGGSGGTAFDDGCYTGVRQINISRNVGIVIFDYPYEILTHVTGHYGPVMYMGPNVIKSLTFHTTKAKYGPFGEAQGTPFSTNVKEGKIVGFHGRKGLFLDALGVHIVEGKVTPASRPPSSDIVPATQPLLENESAHWTKKLAPSNGRPLEEMARVVKEPAPCGPGPWGGDGGKPWDDGVFSGIKQIYLTKSLEAFCSIQIEYDRNKQSVWSVKHGGNGGTTVHRVKLDYPHEVLTCISGYYGYVGKDERQQVIKSLTLHTSRGKFGPFGEEIGTFFTSTITEGKVVGFHGRSSLYLDAIGVHMQHWLGSQRSSKSSMFKLF 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2554741 2557902 + Cp4.1LG07g03940.1 Cpe07g00395 472202

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00395 478 Pfam Jacalin-like lectin domain 188 263 IPR001229 -
Cpe07g00395 478 Pfam Jacalin-like lectin domain 3 69 IPR001229 -
Cpe07g00395 478 Pfam Jacalin-like lectin domain 329 461 IPR001229 -
Cpe07g00395 478 MobiDBLite consensus disorder prediction 119 154 - -
Cpe07g00395 478 CDD Jacalin 163 263 IPR033734 GO:0030246
Cpe07g00395 478 SUPERFAMILY Mannose-binding lectins 2 69 IPR036404 -
Cpe07g00395 478 PANTHER BNAA06G13880D PROTEIN 409 462 - -
Cpe07g00395 478 CDD Jacalin 332 461 IPR033734 GO:0030246
Cpe07g00395 478 Gene3D - 187 264 IPR036404 -
Cpe07g00395 478 Gene3D - 141 186 IPR036404 -
Cpe07g00395 478 Gene3D - 310 461 IPR036404 -
Cpe07g00395 478 ProSiteProfiles Jacalin-type lectin domain profile. 318 462 IPR001229 -
Cpe07g00395 478 SUPERFAMILY Mannose-binding lectins 153 263 IPR036404 -
Cpe07g00395 478 ProSiteProfiles Jacalin-type lectin domain profile. 152 265 IPR001229 -
Cpe07g00395 478 PANTHER JACALIN-RELATED LECTIN 3 187 403 - -
Cpe07g00395 478 PANTHER JACALIN-RELATED LECTIN 3 2 187 - -
Cpe07g00395 478 Gene3D - 1 71 IPR036404 -
Cpe07g00395 478 SMART Jacalin_2 329 462 IPR001229 -
Cpe07g00395 478 SMART Jacalin_2 163 265 IPR001229 -
Cpe07g00395 478 PANTHER BNAA06G13880D PROTEIN 187 403 - -
Cpe07g00395 478 PANTHER BNAA06G13880D PROTEIN 2 187 - -
Cpe07g00395 478 SUPERFAMILY Mannose-binding lectins 318 460 IPR036404 -
Cpe07g00395 478 ProSiteProfiles Jacalin-type lectin domain profile. 1 69 IPR001229 -
Cpe07g00395 478 PANTHER JACALIN-RELATED LECTIN 3 409 462 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00395 - - - cpep:111798429 914.064
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00395 Cpe11g00223 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00223 Cpe-Chr11:1200758 Cpe07g00395 Cpe-Chr7:2554741 6.00E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1012 Blo01g01579 . Bda01g00513 . . . . Bma01g02342 Cmo05g00275 Cmo12g00391 . . . Car12g00417 . . Cpe07g00395 . . . . . . . Cla08g01457 . . . . . . . Cone7ag1852 . . . . . Cme03g01921 . . . . . . . . Sed01g2548 . . Cma12g00440 Cma05g00270 . . Cpe11g00223 . Bhi09g02137 Tan01g4934 Cmetu04g1048 . . Mch11g0183 . . . . . . . . Lsi08g01363 Csa02g02090 Chy03g01425 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002824 2 1 2 2 1 2 2 2 2 1 1 2 3 1 1 3 2 2 3 2 2 2 2 1 0 1 1 2 3 2 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00395 Cpe_Chr07 FPKM 0.615801 0.32483 0.980691 0.92016 1.534225 0.800076 1.648397 0.732467 0.73313 0.354718