Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe07g00420 | ATGGATATGCGAGAGCAGGAGAAGGAAGTAATGATGCCTGCTGTTTCTGGCGGTGGAGGCGGATATGCGCATATTTTTGGGGAAACGTCGTCTGGAGTTGTGGAGAGGAGAATCGAGTCGGTTCATAATGGTTCTCATCATCATATCCAACCAGAGCATCTCGACGCTGATCTTGTTGCTGGAGAGGATGTGCGCGGCGGCGGAGGCGGCGGCGGTGGAGGTGGCGGCGGAGGCGGCGGCGGTGGAGGTGGCGGTGGAGGTGGCGGTGGTGGAGGTGGAGGTAGATCCAAGGTGAGAGGAGCGGGGACTGGAGTTAGGTATCGAGAGTGTTTGAAGAATCACGCGGCGAGCGTTGGGGGGAATATATACGACGGATGCGGGGAGTTTATGCCTAGTGGTGAAGACGGAACCCTAGAGGCTTTGAAATGTGCCGCCTGTGAATGTCATCGAAACTTCCACAGGAAAGAAATCGACGGCGAGAATCAATTAAGTATCGGTGCTAATTACAGAAGAGGATTAATGTTACCTCATCTCCAGCTTCCTGCGCCATTACCGTCTCCTTCCGCTCTCCACGGACACCATAAATTCTCCATGGCGTTGAATCTCCATTCCAGTCCTACCGCTCCAATCATCGCTCCAATGAACGTCGCCTACGCCGGTGGTGGCGGAACCGAGTCTTCCAGCGAGGATTTGAACGTCTTCCAATCAAATGCCGAGGTCATGCCGCCGTCTTCCTACACCTTATCGAAAAAGCGCTTCCGTACGAAGTTCACACAGGAGCAAAAGGATCGAATGCTCGAGTTCGCAGAGAAGATCGGATGGAGGATTCAAAAGCAAGACGAAGAAGAAGTGGAGAGATTCTGTAGCGAAGTCGGAGTGAAACGGCAAGTCCTCAAAGTCTGGATGCACAACAACAAGAACACAATGAAGAAGCAGAACGACAATAACGAACCAGAACTTGCCGTTGCCGTCGCCGTCGCCGTCGCCGGTGCCGGTTCCGGTGCCGCCGTGATGAGTGAATCATAG | 1026 | 53.7 | MDMREQEKEVMMPAVSGGGGGYAHIFGETSSGVVERRIESVHNGSHHHIQPEHLDADLVAGEDVRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGRSKVRGAGTGVRYRECLKNHAASVGGNIYDGCGEFMPSGEDGTLEALKCAACECHRNFHRKEIDGENQLSIGANYRRGLMLPHLQLPAPLPSPSALHGHHKFSMALNLHSSPTAPIIAPMNVAYAGGGGTESSSEDLNVFQSNAEVMPPSSYTLSKKRFRTKFTQEQKDRMLEFAEKIGWRIQKQDEEEVERFCSEVGVKRQVLKVWMHNNKNTMKKQNDNNEPELAVAVAVAVAGAGSGAAVMSES | 341 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2710667 | 2711692 | - | Cp4.1LG07g04160.1 | Cpe07g00420 | 472227 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe07g00420 | 341 | Gene3D | - | 237 | 311 | - | - | |
| Cpe07g00420 | 341 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 107 | 156 | IPR006456 | - | |
| Cpe07g00420 | 341 | MobiDBLite | consensus disorder prediction | 61 | 97 | - | - | |
| Cpe07g00420 | 341 | ProSiteProfiles | 'Homeobox' domain profile. | 248 | 312 | IPR001356 | GO:0003677 | |
| Cpe07g00420 | 341 | Pfam | ZF-HD protein dimerisation region | 105 | 157 | IPR006456 | - | |
| Cpe07g00420 | 341 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 106 | 157 | IPR006456 | - | |
| Cpe07g00420 | 341 | SUPERFAMILY | Homeodomain-like | 242 | 312 | IPR009057 | - | |
| Cpe07g00420 | 341 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 7 | 101 | 312 | - | - | |
| Cpe07g00420 | 341 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 101 | 312 | - | - | |
| Cpe07g00420 | 341 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 250 | 307 | IPR006455 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe07g00420 | Cpe-Chr7:2710667 | Cpe19g00746 | Cpe-Chr19:5752708 | 2.00E-61 | dispersed | |
| Cpe09g01099 | Cpe-Chr9:9485234 | Cpe07g00420 | Cpe-Chr7:2710667 | 1.97E-40 | dispersed | |
| Cpe01g01712 | Cpe-Chr1:11426926 | Cpe07g00420 | Cpe-Chr7:2710667 | 2.43E-62 | transposed | |
| Cpe08g01331 | Cpe-Chr8:9566459 | Cpe07g00420 | Cpe-Chr7:2710667 | 4.40E-60 | transposed | |
| Cpe10g00617 | Cpe-Chr10:3583021 | Cpe07g00420 | Cpe-Chr7:2710667 | 1.84E-67 | wgd | |
| Cpe11g00204 | Cpe-Chr11:1107091 | Cpe07g00420 | Cpe-Chr7:2710667 | 6.86E-180 | wgd | |
| Cpe19g00812 | Cpe-Chr19:6085016 | Cpe07g00420 | Cpe-Chr7:2710667 | 6.13E-71 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49739 | PF04770 | ZF-HD_dimer | 6.10E-30 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe07g00420 | - | - | cmax:111492398 | 476.092 |