Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00420 ATGGATATGCGAGAGCAGGAGAAGGAAGTAATGATGCCTGCTGTTTCTGGCGGTGGAGGCGGATATGCGCATATTTTTGGGGAAACGTCGTCTGGAGTTGTGGAGAGGAGAATCGAGTCGGTTCATAATGGTTCTCATCATCATATCCAACCAGAGCATCTCGACGCTGATCTTGTTGCTGGAGAGGATGTGCGCGGCGGCGGAGGCGGCGGCGGTGGAGGTGGCGGCGGAGGCGGCGGCGGTGGAGGTGGCGGTGGAGGTGGCGGTGGTGGAGGTGGAGGTAGATCCAAGGTGAGAGGAGCGGGGACTGGAGTTAGGTATCGAGAGTGTTTGAAGAATCACGCGGCGAGCGTTGGGGGGAATATATACGACGGATGCGGGGAGTTTATGCCTAGTGGTGAAGACGGAACCCTAGAGGCTTTGAAATGTGCCGCCTGTGAATGTCATCGAAACTTCCACAGGAAAGAAATCGACGGCGAGAATCAATTAAGTATCGGTGCTAATTACAGAAGAGGATTAATGTTACCTCATCTCCAGCTTCCTGCGCCATTACCGTCTCCTTCCGCTCTCCACGGACACCATAAATTCTCCATGGCGTTGAATCTCCATTCCAGTCCTACCGCTCCAATCATCGCTCCAATGAACGTCGCCTACGCCGGTGGTGGCGGAACCGAGTCTTCCAGCGAGGATTTGAACGTCTTCCAATCAAATGCCGAGGTCATGCCGCCGTCTTCCTACACCTTATCGAAAAAGCGCTTCCGTACGAAGTTCACACAGGAGCAAAAGGATCGAATGCTCGAGTTCGCAGAGAAGATCGGATGGAGGATTCAAAAGCAAGACGAAGAAGAAGTGGAGAGATTCTGTAGCGAAGTCGGAGTGAAACGGCAAGTCCTCAAAGTCTGGATGCACAACAACAAGAACACAATGAAGAAGCAGAACGACAATAACGAACCAGAACTTGCCGTTGCCGTCGCCGTCGCCGTCGCCGGTGCCGGTTCCGGTGCCGCCGTGATGAGTGAATCATAG 1026 53.7 MDMREQEKEVMMPAVSGGGGGYAHIFGETSSGVVERRIESVHNGSHHHIQPEHLDADLVAGEDVRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGRSKVRGAGTGVRYRECLKNHAASVGGNIYDGCGEFMPSGEDGTLEALKCAACECHRNFHRKEIDGENQLSIGANYRRGLMLPHLQLPAPLPSPSALHGHHKFSMALNLHSSPTAPIIAPMNVAYAGGGGTESSSEDLNVFQSNAEVMPPSSYTLSKKRFRTKFTQEQKDRMLEFAEKIGWRIQKQDEEEVERFCSEVGVKRQVLKVWMHNNKNTMKKQNDNNEPELAVAVAVAVAGAGSGAAVMSES 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2710667 2711692 - Cp4.1LG07g04160.1 Cpe07g00420 472227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00420 341 Gene3D - 237 311 - -
Cpe07g00420 341 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 107 156 IPR006456 -
Cpe07g00420 341 MobiDBLite consensus disorder prediction 61 97 - -
Cpe07g00420 341 ProSiteProfiles 'Homeobox' domain profile. 248 312 IPR001356 GO:0003677
Cpe07g00420 341 Pfam ZF-HD protein dimerisation region 105 157 IPR006456 -
Cpe07g00420 341 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 106 157 IPR006456 -
Cpe07g00420 341 SUPERFAMILY Homeodomain-like 242 312 IPR009057 -
Cpe07g00420 341 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 101 312 - -
Cpe07g00420 341 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 101 312 - -
Cpe07g00420 341 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 250 307 IPR006455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00420 - - - cmax:111492398 476.092
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00420 Cpe-Chr7:2710667 Cpe19g00746 Cpe-Chr19:5752708 2.00E-61 dispersed
Cpe09g01099 Cpe-Chr9:9485234 Cpe07g00420 Cpe-Chr7:2710667 1.97E-40 dispersed
Cpe01g01712 Cpe-Chr1:11426926 Cpe07g00420 Cpe-Chr7:2710667 2.43E-62 transposed
Cpe08g01331 Cpe-Chr8:9566459 Cpe07g00420 Cpe-Chr7:2710667 4.40E-60 transposed
Cpe10g00617 Cpe-Chr10:3583021 Cpe07g00420 Cpe-Chr7:2710667 1.84E-67 wgd
Cpe11g00204 Cpe-Chr11:1107091 Cpe07g00420 Cpe-Chr7:2710667 6.86E-180 wgd
Cpe19g00812 Cpe-Chr19:6085016 Cpe07g00420 Cpe-Chr7:2710667 6.13E-71 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe11g00465 . 50 233 ZF-HD Transcription Factor Family AT4G24660 55.6 2.7e-52 202.6
Cpe07g00420 . 99 309 ZF-HD Transcription Factor Family AT4G24660 50.7 2.4e-48 189.5
Cpe19g00746 . 48 244 ZF-HD Transcription Factor Family AT4G24660 51.8 3.1e-48 189.1
Cpe01g00763 . 59 223 ZF-HD Transcription Factor Family AT4G24660 54.7 9.0e-48 187.6
Cpe01g01712 . 82 281 ZF-HD Transcription Factor Family AT2G02540 54.4 4.0e-51 199.1
Cpe08g01331 . 70 264 ZF-HD Transcription Factor Family AT2G02540 51.2 4.1e-48 189.1
Cpe01g01712 . 79 284 ZF-HD Transcription Factor Family AT1G14440 55.2 3.2e-56 216.1
Cpe08g01331 . 67 264 ZF-HD Transcription Factor Family AT1G14440 54.3 2.5e-53 206.5
Cpe19g00812 CST 120 322 ZF-HD Transcription Factor Family AT2G18350 56.4 1.8e-52 203.4
Cpe03g00513 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.9 1.9e-49 193.4
Cpe13g00949 . 9 247 ZF-HD Transcription Factor Family AT5G15210 54.3 4.3e-49 192.2
Cpe04g00062 . 13 284 ZF-HD Transcription Factor Family AT5G15210 50.2 8.3e-45 177.9
Cpe03g00513 . 22 265 ZF-HD Transcription Factor Family AT3G28920 57.4 4.9e-57 218.8
Cpe01g02394 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.5 2.4e-56 216.5
Cpe13g00949 . 18 249 ZF-HD Transcription Factor Family AT3G28920 58.3 4.6e-55 212.2
Cpe04g00062 . 23 250 ZF-HD Transcription Factor Family AT3G28920 62.9 5.6e-53 205.3
Cpe01g02394 . 25 252 ZF-HD Transcription Factor Family AT5G39760 53.8 1.9e-51 200.3
Cpe03g00513 . 30 254 ZF-HD Transcription Factor Family AT5G39760 56.3 6.2e-50 195.3
Cpe13g00949 . 26 253 ZF-HD Transcription Factor Family AT5G39760 56.2 8.1e-50 194.9
Cpe04g00062 . 31 259 ZF-HD Transcription Factor Family AT5G39760 64.5 5.3e-49 192.2
Cpe01g02394 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.4 1.3e-49 193.7
Cpe09g00178 . 1 188 ZF-HD Transcription Factor Family AT1G69600 50.5 3.2e-48 189.1
Cpe13g00949 . 59 250 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-48 187.6
Cpe03g00513 . 58 250 ZF-HD Transcription Factor Family AT1G69600 50.5 9.7e-45 177.6
Cpe01g01712 . 82 281 ZF-HD Transcription Factor Family AT2G02540 54.4 4.0e-51 199.1
Cpe08g01331 . 70 264 ZF-HD Transcription Factor Family AT2G02540 51.2 4.1e-48 189.1
Cpe11g00465 . 50 233 ZF-HD Transcription Factor Family AT4G24660 55.6 2.7e-52 202.6
Cpe07g00420 . 99 309 ZF-HD Transcription Factor Family AT4G24660 50.7 2.4e-48 189.5
Cpe19g00746 . 48 244 ZF-HD Transcription Factor Family AT4G24660 51.8 3.1e-48 189.1
Cpe01g00763 . 59 223 ZF-HD Transcription Factor Family AT4G24660 54.7 9.0e-48 187.6
Cpe01g02394 . 25 252 ZF-HD Transcription Factor Family AT5G39760 53.8 1.9e-51 200.3
Cpe03g00513 . 30 254 ZF-HD Transcription Factor Family AT5G39760 56.3 6.2e-50 195.3
Cpe13g00949 . 26 253 ZF-HD Transcription Factor Family AT5G39760 56.2 8.1e-50 194.9
Cpe04g00062 . 31 259 ZF-HD Transcription Factor Family AT5G39760 64.5 5.3e-49 192.2
Cpe19g00812 CST 120 322 ZF-HD Transcription Factor Family AT2G18350 56.4 1.8e-52 203.4
Cpe01g02394 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.4 1.3e-49 193.7
Cpe09g00178 . 1 188 ZF-HD Transcription Factor Family AT1G69600 50.5 3.2e-48 189.1
Cpe13g00949 . 59 250 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-48 187.6
Cpe03g00513 . 58 250 ZF-HD Transcription Factor Family AT1G69600 50.5 9.7e-45 177.6
Cpe03g00513 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.9 1.9e-49 193.4
Cpe13g00949 . 9 247 ZF-HD Transcription Factor Family AT5G15210 54.3 4.3e-49 192.2
Cpe04g00062 . 13 284 ZF-HD Transcription Factor Family AT5G15210 50.2 8.3e-45 177.9
Cpe01g01712 . 79 284 ZF-HD Transcription Factor Family AT1G14440 55.2 3.2e-56 216.1
Cpe08g01331 . 67 264 ZF-HD Transcription Factor Family AT1G14440 54.3 2.5e-53 206.5
Cpe03g00513 . 22 265 ZF-HD Transcription Factor Family AT3G28920 57.4 4.9e-57 218.8
Cpe01g02394 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.5 2.4e-56 216.5
Cpe13g00949 . 18 249 ZF-HD Transcription Factor Family AT3G28920 58.3 4.6e-55 212.2
Cpe04g00062 . 23 250 ZF-HD Transcription Factor Family AT3G28920 62.9 5.6e-53 205.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005524 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49739 PF04770 ZF-HD_dimer 6.10E-30 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00420 Cpe_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0