Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00424 CCAAATACCGATAATGTTTACCCGCCAGATTTACGCGTTGAGACAGTTTTCCGGTTGAATCTCCGCCTTCTACTGTCCACCTTCTTCATCGGCGGAGCCGATCGCCGCCGTCCCATCAAACACCAATCGAGACAGCTATCCTTTTGCCTCTCCTTGTTTTCGCTTGAATTCTCATACCCTGTATCCCCTCGAAACTTTCTTGGAGTTCCCAAAGGGATTCATACACTAAGATTAAATCGGTCGTGTGCTATTGGTGCCATGGGTGAGAATCTAGGGACTGTCATGAAGGACAAGAGAACGCATTCTCTGGATGTCACCCACAGTGAGGATGTCCAGCAACCATGCATATGGTCATCATCAGTAGAATGCAATATTGACATAGGAAAGCAGATTTTTTGCAATAGATCTTTGAATATGAAAAATATTGTTGCCGTGGGGTTCGACATGGATTACACGTTGGCACAATACAAGCCAGAAACTTTCGAGTCCCTTGCATATGAAGGCACAATAAGAAAGCTGGTTTATGATTTGGCGTATTCCGAAGAGTTGCTGAATTGGTCATTTGATTGGAAATACATGGTCAGAGGTTTGGTTCTTGACAAAAGGAGAGGCAACATATTGAAGATGGATAGGCACAAGTATGTCAAAGTGGCCTATCATGGTTTCAAAGAGTTGTCCAAGGATGATAAAGTCGAGACCTATGGAAGTACTCTAGTACGGGATTCGTTTGATGAACCCGACTATGCTCTCATTGATACCCTTTTTTCACTAGCTGAAGCTTACTTGTTTGCTCAACTGGTTGACTTTAAGGACAATAATCCAGACAAAGTTCCAGAGGATGTCGATTATGCTCGAATGTATAAAGATGTTAGAGCTGCAGTAGATATGTGTCACCGCGACGGAACCTTAAAGCAAATGGTTGCAAAGGATCCCAAAAGGTTTATCAATATGGATACCTCAATTGTACCCATGCTTAAAATGCTCAGAGATTCTGGCCGTTCTACTTTCTTGGTGACAAACAGCTTATGGGACTATACGAACGTTGTGATGAACTTTCTTTGTACTTCTTCTGCACCAGAGGGTGATCAGAAGTGCAATTTAGATTGGCTTCAGTATTTCGATGTCGTCATTACTGGCAGTGCTAAACCAGGCTTTTTCCATGAGGACAACCGTGCTAATCTATTTGGGGTCGAACCGAAGTCAGGAATGCTACTTAATACTGATAATGGCTCGCCTTTACCTCAGGTCGGAAACACTTCAGAAGCATCTTCACCGACGAAGGTAGATAAATCTTGCAAAGTTTTTCAGGGAGGCAATGTCATGCATCTGCATAAACTTCTTCAAATTGAATCAAGTTCACAGGTTCTCTATGTTGGGGATCACATCTATGGAGATATATTACGAAGCAAAAAGGCTCTCGGATGGAGGACTATGCTTGTTGTTCCAGAGCTCGAAAGGGAGGTCGAGCTCTTATGGGAGTTGAGGAAGACACGCAAGCAACTTCAGCTATTAAGAAACGATCGGGATGCCATCGAAGACAAAATACATCATTTGAAGTGGTCTCTCAAGTTTGAAGACATCAAGGCTGATGAAAAGGAGAGACTATCTGCTGAACTACATCAGTTAGAGAGTGAACAGGAACGAGTGCGGCTGAGTCATCAAGACGCCCTACGGGAATGTCACCGACAGTTTCATGGGGTTTGGGGACAGCTTATGAAGACTGGATATCAAAACTCTAGGTTTGCTCATCAAGTAGAGAGATTTGCATGTCTTTACAGCAGCCAAGTGACCAACTTGAGCCTTTATTCCCCAGCTAAATACTACAGGCCAAGTGAAGATTTCATGCCCCATGAATTTGGCTGCTCCCCAGGTCTACCGTCGTCAACTATCGATAACTATCGATAA 1905 43.57 PNTDNVYPPDLRVETVFRLNLRLLLSTFFIGGADRRRPIKHQSRQLSFCLSLFSLEFSYPVSPRNFLGVPKGIHTLRLNRSCAIGAMGENLGTVMKDKRTHSLDVTHSEDVQQPCIWSSSVECNIDIGKQIFCNRSLNMKNIVAVGFDMDYTLAQYKPETFESLAYEGTIRKLVYDLAYSEELLNWSFDWKYMVRGLVLDKRRGNILKMDRHKYVKVAYHGFKELSKDDKVETYGSTLVRDSFDEPDYALIDTLFSLAEAYLFAQLVDFKDNNPDKVPEDVDYARMYKDVRAAVDMCHRDGTLKQMVAKDPKRFINMDTSIVPMLKMLRDSGRSTFLVTNSLWDYTNVVMNFLCTSSAPEGDQKCNLDWLQYFDVVITGSAKPGFFHEDNRANLFGVEPKSGMLLNTDNGSPLPQVGNTSEASSPTKVDKSCKVFQGGNVMHLHKLLQIESSSQVLYVGDHIYGDILRSKKALGWRTMLVVPELEREVELLWELRKTRKQLQLLRNDRDAIEDKIHHLKWSLKFEDIKADEKERLSAELHQLESEQERVRLSHQDALRECHRQFHGVWGQLMKTGYQNSRFAHQVERFACLYSSQVTNLSLYSPAKYYRPSEDFMPHEFGCSPGLPSSTIDNYR 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2726593 2733494 + Cp4.1LG07g04130.1 Cpe07g00424 472231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00424 634 SUPERFAMILY HAD-like 129 619 IPR036412 -
Cpe07g00424 634 CDD HAD_cN-II 132 505 - -
Cpe07g00424 634 Coils Coil 494 514 - -
Cpe07g00424 634 Gene3D - 286 510 IPR023214 -
Cpe07g00424 634 Gene3D - 127 183 IPR023214 -
Cpe07g00424 634 Coils Coil 525 559 - -
Cpe07g00424 634 TIGRFAM HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase 131 501 IPR008380 -
Cpe07g00424 634 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 80 621 IPR008380 -
Cpe07g00424 634 Pfam 5' nucleotidase family 131 619 IPR008380 -
Cpe07g00424 634 PANTHER BNAA07G31970D PROTEIN 80 621 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00424 - - - csv:101216999 1029.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00424 Cpe-Chr7:2726593 Cpe12g00353 Cpe-Chr12:2401042 1.74E-66 dispersed
Cpe11g00199 Cpe-Chr11:1079100 Cpe07g00424 Cpe-Chr7:2726593 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g945 . Blo12g00908 . Bda03g00260 . Bpe04g00213 Bma04g00209 . . . . . . Car12g00446 . . Cpe07g00424 . . . . . . . Cla08g01488 Cam08g1978 Cec08g1552 Cco08g1689 Clacu08g1668 . Cre08g1451 . . Cone17ag1342 Cone20ag0139 . . . Cme03g01956 . Blo18g00815 Bda08g01284 Bda01g01493 Bpe02g01689 Bpe05g00090 . Bma05g00120 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01395 Csa02g02053 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003481 3 3 3 2 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 3 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00424 Cpe_Chr07 FPKM 26.48148 29.758268 12.135339 12.555717 8.270629 7.809815 6.64011 3.699194 4.157102 3.849852