Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00428 ATGGATGATGAACTTCAGCTTGCAAGATTCTCGCATCGCCAGCCTCGTGTTAAAGTGTGCTCATCGCCTTGGCTTGATTTGAGAGTGTTCTATGTTAGGATCAGTAATTTCCAAGTAGACAGCTTGACGCCCGAGTTCCTCACGCTCAACCATATCCCTCTCAGCCCGGACACCCTTTTTGAAGTCAATGGCGTTAGGAGTAGTAGTCGCTCGGAGGGAGTCTCTTCCTCTCTGAGGAGAGATAGAGCTGATAAGGAATCAGAAGAAGCTACTTTTGTGACTACTGACAATATAAGGTTGAGTGGAAGTGTAAAATTTGAGGTATATGATAAGGAAGATTTGATTCTTTCTGGGGTTTTGGAGATGTTGGATTCCAATGGTTTATTAGGTGAATCCAAAAGCAATGCCAAGAGGTGGAGCATCATGAGTTGTAAGTCGATGTTGGGTGGCGGGCTCTTGAAGGGAAAGCAGCATATGATTGGAGGTGAAACCCCGTCCCCGATGATCGACGTTTATATAGCTGGTAGCTTCTCTGGAAGTCCTATCATCTTGACCAAAACTTTGCAGCTAAGCTCCCGAAAGAAACAGAGTTGGAAATCCATGTTGGACACGATACCGGAGTCTGAGACGCCTGATTCTAATGAAGATCACTTTCCAGAATATGATTTACAGAAAATATCTTCTGGTTACATGCATTTGTTCACCTTTGTTCTGGATCTATCTGTAGATAAACCACAATTAGATCAAATGCTGGATGATATTATACTGCTAATAGTTGAAAAGGCAACAGAATATGGGAGATACAAACAGGACATTGACAACGGCAACGATTACAGCAACATGTACTGGAAGAGGAGAGAATATTTAGACGATGAAGATGGTGAACTCTCCTGGTTCAATGCAGGTGTGAGAGTTGGTGTTGGTATAGGGCTCGGTGTTTGTGTCGGTATTGGTGTAGGAGTTGGCTTGCTCGTTCGTACCTACCGAGCCACTACTCGGAACATCACGAGGCGATTCGTTTGA 1023 44.09 MDDELQLARFSHRQPRVKVCSSPWLDLRVFYVRISNFQVDSLTPEFLTLNHIPLSPDTLFEVNGVRSSSRSEGVSSSLRRDRADKESEEATFVTTDNIRLSGSVKFEVYDKEDLILSGVLEMLDSNGLLGESKSNAKRWSIMSCKSMLGGGLLKGKQHMIGGETPSPMIDVYIAGSFSGSPIILTKTLQLSSRKKQSWKSMLDTIPESETPDSNEDHFPEYDLQKISSGYMHLFTFVLDLSVDKPQLDQMLDDIILLIVEKATEYGRYKQDIDNGNDYSNMYWKRREYLDDEDGELSWFNAGVRVGVGIGLGVCVGIGVGVGLLVRTYRATTRNITRRFV 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2749985 2752952 + Cp4.1LG07g04330.1 Cpe07g00428 472235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00428 340 PANTHER FORMATE DEHYDROGENASE 1 2 225 - -
Cpe07g00428 340 PANTHER FORMATE DEHYDROGENASE 1 259 340 - -
Cpe07g00428 340 PANTHER - 2 225 - -
Cpe07g00428 340 PANTHER - 259 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00428 - - - csv:101217701 444.891
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00428 Cpe11g00195 CCT
Cpe02g00130 Cpe07g00428 CCT
Cpe07g00428 Cpe11g00195 ECH
Cpe02g00130 Cpe07g00428 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00428 Cpe-Chr7:2749985 Cpe08g00534 Cpe-Chr8:3481068 1.09E-63 dispersed
Cpe11g00195 Cpe-Chr11:1062224 Cpe07g00428 Cpe-Chr7:2749985 3.04E-158 wgd
Cpe02g00130 Cpe-Chr2:642989 Cpe07g00428 Cpe-Chr7:2749985 5.61E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g937 . . Bda01g00532 . Bpe02g00394 . . Bma01g02318 . . Cma01g01906 . Car01g01488 Car12g00450 . . Cpe07g00428 Bhi04g00251 Tan02g1953 . . Hepe10g0649 . Lcy13g1992 Cla08g01495 Cam08g1984 Cec08g1559 Cco08g1696 Clacu08g1674 . Cre08g1457 . . . . Lsi04g01658 Csa03g04203 Chy04g00515 Cme03g01962 Blo17g00804 . Bda08g01289 . . Bpe05g00085 . Bma05g00115 . Cmo01g01969 . . . Car05g00196 . Cpe11g00195 Cpe02g00130 . . . . . . . Cla05g01945 Cam05g2088 Cec05g2101 Cco05g2155 Clacu05g2083 Cmu05g1959 Cre05g2078 Lsi08g01400 Csa02g02046 Chy03g01467 Cme04g00573
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005156 1 2 1 1 1 1 2 1 1 1 1 1 0 1 1 0 1 4 2 1 1 1 1 1 1 1 2 6 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00428 Cpe_Chr07 FPKM 23.94137 26.620531 11.608978 12.830211 12.133299 10.932667 11.668196 20.485313 18.495132 19.725018