Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00430 ATGGCTGGCCGCGTTGAGTTTGGTTCTCGTCCTAATCTCTCTGTTTCCAGTCCTCTCCATGCCGCCAATGATGTTCAGGGATCTGAAAATCCTATTCCTCTTTCACCACAGTGGCTTCTGCCTAAGCCTGGGGAGAGTAAGCATGGAATTGGAAGTGGGGAAAACCATGTCAGTCATCAACCTGCTCATGGAAACCGGGTGGACATGATGAAGGGATCAGAGAACTATGAGGATATGAATGACATACAAAAGAAAAAAGACGTTTTTAGGCCATCCTTGACTGATACTGAAATTGGTAGGCGTGACCGTTGGCATGACGAAGAAAGAGAAAATAATTCTTCAATGCGTAAAGATCGTTGGAGGGATGGTGAGAAAGAGGTAGGTGATAGTCGTAAGATGGACCGTTGGACTGAAGACTCGTCCACCAAACTCTTTAGAGAATCTCGTCGAGTCCCATCAGAACGCAGGTCTGATTCAAGCAATCGGGACAATGTTCATTATGATCAACGACGTGAGAGCAAATGGAATACACGTTGGGGCCCTGATGATAAGGAAACTGAAGGCTTTCGTGAGAAGCGGGTGGACTCTGGAAGAGATGGTGATTTGCATCTTGATAAAAATTTCTCTCACGTGTCCAATTATGGGAAAAATGACCGGGATGGAGATCATTATCGCCCATGGAGATCTAGTTCCTCTCAGGGTCGAGGTAAGGGAGAACCCCCTCACCATCAGACCCATACTCCAATCAAACAAGTGCCTACATTTTCCCATCGTGGACGTGCAGACAACACACCTCCTACCTTCTCCTCGGGTCGTGGAATCATCAGTTCTGGTGTAAACCCTACAAATAGTATTTATTCATCTTCTAATTCTCTTGGAGCTTCCTCTGAGAGATTTGGAAGAGAGCCTTTCCACTACAAATATAGCAGGACAAAGTTGCTTGATGTTTTCAGGACTACCAATCTGACATCACAGCAAACTCTCAAAGATGGATTTGTGCCAGTGCCTACTCTTACGCTGGATGAACCATTGGAACCTCTTGCTCTTTGTGCACCAACTACAGAAGAAATGAATTTCTTGAAGGGGATTGATAAAGGGGAAATTGTTAGTAGTGGTGTACCTCAAGTATCAAAGGACGTTCGAAACTCATCAGAAAATATGCAGACAAGACGAACAAAACTTGGTGTTTCACCTTCCCCAGGCAACAGAGAAGATTTACCTCATGGCTTTGATGATTACAATGATGATAAGGATGATAGCACTGCTAAACCAGGTCACACAAACTATTCAGAGGTCTCTACCGAGAGGCAGGTGCCTTATCGTAGGCCCCAGTCAAAAATTGAAACCATTCAGGAACGCATGGCACATGCTAGTAGCAAGTTCAAATCTGAAGGTTTCAGAGAAGATGACAATGCTATGAGTAAAGCAGATGAGGTGCCTGTCAGTAGGGACTCAAGTGTTAAGGGGGGTACCAATGTTCATCCTGACAGTTTGTGGAACGCCTCATCACTTGAGCAACCCCGGAATACATCCTTGTCTGACTGGAGAGATAATTCTAATAATATTAGCTCAGGAACTTCTGACAAGGGTTGGCTACAGCCTTCAAAGAGTCTTAATGATGGGTGGGGAAATAATCCAGCTACTCCATCTTATCCAAAGGACAATTCCAAATGGCAGACTGGGGAAGAATCTATCATTAGAAGGCAGATTTCAGGGATTTTGGACAAGGAACAACTAGCAAGAAAATCTGTTCAACCTTCTCCAGAGGATTTGCAATTTCATTACATTGATCCTTCTGGTGCAATTCAAGGCCCATTTAGTGGGGCTGACATTATTCAATGGTTTGAGGGTGGGTATTTTGGCTTAGAGTTGCCTGTCCGTCTGGCAAATGCACCAAATGACGTGCCATTTTCAGCACTTGGTGATGTCATGCCTCATTTACGATCTAAGGCCAAACCACCACCAGGATTTAACGCACCAAAGGCTAATGAATTTGCAGATACATTAAGTAATGCTAGTTATGGTAGCTTGGGAAAGCTTCATACTGGTTTGAATGAGATTGATACTTTGAGGAATGAGACAAGGCATAAACATGGCCCAGCGGTGGAAGCTGAAAACAGATTTTTGGAGTCACTTATGTCTAGTAATAAAGGTTCTTCCCCTCTCGAGAAGGGTGCCTTTTCTGAAGGTGTGCCAGGATATTTTGGAACTAATAATTTGTCTTCGTTGGGAATGGACAATGGGAACAACCTTTTCCTGTTGGCCAAAAGAATGGAACTTGAACGGCAGAGGTCTTTGACCAATCCTTATGCATTCTGGCCTGGAATAGATGCTACTTCCAAGGTTTCTAAGCCGGATACTAGCCTAGATGATCCAATTCAGCAAGCAAAGCTCTTGTCTTCAATCATAGACCAATCTCGTCAAACTGCTCAAACTGCCGACATGTCAGCCATTCTACAAGGCTTGTCTGACAGAGCACCTCCAGGCATTAGTGATGTTGCTGGCTGGTCAAAATTTGCTTCACAGCATGCTTCTGATCCTCTCCAAAGTAAACTTGACTTGCACCATGATCTTAACGTGCCTTTACAGGCACCTTTCGGTTTCCAACAGCAGAGATTACCACCACAAATGTCCCTGGCAAATGGCGCTCCAATATCTATTGGAAATGCATCTATTGATCCATCTCAAGTTCAGCTATCACGAGAGCAGTTACAGATTGGTTCACAGAAGCCACCAAATGTACTAACTGATCGTGCAACTACCTTCGGGAATATAGCTCTGCAAGTTACCCAGGGAGCAAGTTACAATGTTAATTCGGAAGATCTGTCCCTTGTTGTTCCACACCAAATGTTTGGAAATGTTGTTCAGCAAAAGAGTTGGAATGCTGCTCTTCCGGAGCAGCTTAATGATATTCATCCAAAAGATATGTTACCAGGATCTAAATCAAACGAGGATGTGAATCTTGTACCAACTTCATCTGACAGCGACACTGTTAAAGCTTTGGAGCAGATATCAGAGGATGTACCAAGGGTGGACGCAACTGTCACATCTATTGCATCTGATGTTTCAGTAGAACCTCTTCCTCTCAAAAATGATGAAGTCTCAGTTGCTAGACCACCAGCCGAAGTTCGCGATATTGAAATTCCTGTTCCCATTAGTGTACCCGTTGTGAAGGTTGAAGATGCTAGTACGCCTGTGGAGAAGCTTGAAAGGAATGTATGCAAAGATGATACCTCCGTGGAGACGGAATCGAAAAATGTTGAAGCGCAAGAACCTAGAAAATCTTCTGATAAGAAGACCAAGAAGCAAAAATCTTCAAAGTTGCTTTCCTCTGACCAGGCCAAGTACTCTAAGAATTCTGCTATTCAACAGTCAAAGCAACCAAAAAATGGTAAACCAGAAAATGATTTGAAATTAAAGGAAGATAATCTTGTGGGAAAATCAAGTGATACGTCATCCTCTCCTCAGAAGACCAGGGATGGGGATGCCAAAATTTCCCATGTGGATAGTCAACCAGCCTCTGCTTGGAATGATAGTGAAACTGATCAAGTGAAGTATGACACCAGACTAATTGGCTCTGATTCTGGGCTTAACTCACAAATTCAATCTTGTCAAAGAGCTTGGAAAGTTGCTACGAGTTTCAAGGCAAAGTCGTTATTGGAAATTCAGGAGGAAGAGCAGAAAAGTGCACATATAGAACCTGCTGTGTCAGAGATTTCAACTGCTATCAATTCTATGAGTTTATCAACTCCTTGGGCCGGGGTTGTGAGCAATTTGGACCCAAAAGCTTCCAGAGAAACTCATAAAGATTCTATGAAGTCTGAACCAGTTGAGAAACATGAAAATTTATTGAACTTGAGGAGTAGAAAGAGTCAATTGCATGATCTACTGGCGGAAGATGATATGGAGAAGTCTGGTGCAGGTGTTGTTCGCGTTTCTGACTCGATTCAGATTGCTTCTTCTCCTCAGGTCGTGGCCACACAAGCAGAACCTATGGATGACAATTTTATTGAGGCAAAAGACACCAAAAAGAGCCGTAAGAAATCTGCCAAGTCTAAGGGCGTTGGTATAAAGGCCTCCTCTTCAGTCCCTTCTGCTGATGTGCCTGTTGGTTCAAGTCCCATTGAGAAAGTGAAAATCTCCCGCCAGACACAGCAGGAGAAGGATGCAATGCCTGCCATTCCTTCGGGGCCTTCTTTTGGTGATTTTGTTCTATGGAAGGGAGAAGCTGCGACTGTGGCCCCTGCACCAGCATGGTCTAGTGACTCTGGTAAGTTCCCCAAACCCACATCTTTGAGGGATATTCAGAAGGAGCAGGAAAGAAAAATCTCTGCTGCTCAGCATTCACATCAAATCCCCACTCCGCAAAAGGCTCAGCCAACTCAGGTTGGTCGTAGCAGTAGCAGTAGTACTCCTTCCCGGGCTCTTTCTGCTTCTTCCCCATCGAAGGTTGCATCATCCCCCCTGCAGAACACTCCTTCTCAGTCAAAGTATGGAGGTGATGATGAACTATTTTGGGGGCCCATTGAGTCGAAGCAAGAAAATCAGCAGGTTGATGTCCATCTTGGGAGCCATGGAAGCTGGGGAAATAGAAACACTCCTGAAAAAGCAGCAGCAGCAGCAGCTTCAACTGGGTTGTTAAGCCGACAAAAATCATCTAGTGGCAGAGCCGACACAGCTTCAACTGGGTTCTTAAGTCGACAAAAATCATCGAGTGGCAAAGCTGATTATCTTTCACCCTTGCCTGCACAGTCGTCTCAGAAAGGCAAACAAGACACAGTTACCAAGCATTCAGAAGCTATGGACTTCTGCGATTGGTGTGAGCGTGAATGTGTAAGGCTCCTTGGGACTAAAGACACAAGTTTCCTGGAATTCTGCTTGAAGCAATCAAGATCTGAGGCAGAGCTGCTTTTGATAGAGAACCTTGGATCATATGATCCTGACCATGATTTCATCGATCAATTCCTCAATTACAAGGAGTTGCTCCCAGCAGATGTTCTTGAAATTGCATTTCAAAGTCAGAACAATCGGAAGGTATTTGCAGTAGCTGCCCGAGAAGTGAATTCTGGCCATGCTGGTCGAAATCTGGACCTGGATGCCCCCGTTGGCGGTGATGGGTCCGCAAAGGGTGGGGGAAAGAAGAAAGGAAAGAAAGGGAAGAAGGTAAGTCCATCAGTTTTGGGTTTCAATGTAGTTAGTAATCGAATTATGATGGGTGAGATTCAGACCGTTGAAGATTAG 5241 44.44 MAGRVEFGSRPNLSVSSPLHAANDVQGSENPIPLSPQWLLPKPGESKHGIGSGENHVSHQPAHGNRVDMMKGSENYEDMNDIQKKKDVFRPSLTDTEIGRRDRWHDEERENNSSMRKDRWRDGEKEVGDSRKMDRWTEDSSTKLFRESRRVPSERRSDSSNRDNVHYDQRRESKWNTRWGPDDKETEGFREKRVDSGRDGDLHLDKNFSHVSNYGKNDRDGDHYRPWRSSSSQGRGKGEPPHHQTHTPIKQVPTFSHRGRADNTPPTFSSGRGIISSGVNPTNSIYSSSNSLGASSERFGREPFHYKYSRTKLLDVFRTTNLTSQQTLKDGFVPVPTLTLDEPLEPLALCAPTTEEMNFLKGIDKGEIVSSGVPQVSKDVRNSSENMQTRRTKLGVSPSPGNREDLPHGFDDYNDDKDDSTAKPGHTNYSEVSTERQVPYRRPQSKIETIQERMAHASSKFKSEGFREDDNAMSKADEVPVSRDSSVKGGTNVHPDSLWNASSLEQPRNTSLSDWRDNSNNISSGTSDKGWLQPSKSLNDGWGNNPATPSYPKDNSKWQTGEESIIRRQISGILDKEQLARKSVQPSPEDLQFHYIDPSGAIQGPFSGADIIQWFEGGYFGLELPVRLANAPNDVPFSALGDVMPHLRSKAKPPPGFNAPKANEFADTLSNASYGSLGKLHTGLNEIDTLRNETRHKHGPAVEAENRFLESLMSSNKGSSPLEKGAFSEGVPGYFGTNNLSSLGMDNGNNLFLLAKRMELERQRSLTNPYAFWPGIDATSKVSKPDTSLDDPIQQAKLLSSIIDQSRQTAQTADMSAILQGLSDRAPPGISDVAGWSKFASQHASDPLQSKLDLHHDLNVPLQAPFGFQQQRLPPQMSLANGAPISIGNASIDPSQVQLSREQLQIGSQKPPNVLTDRATTFGNIALQVTQGASYNVNSEDLSLVVPHQMFGNVVQQKSWNAALPEQLNDIHPKDMLPGSKSNEDVNLVPTSSDSDTVKALEQISEDVPRVDATVTSIASDVSVEPLPLKNDEVSVARPPAEVRDIEIPVPISVPVVKVEDASTPVEKLERNVCKDDTSVETESKNVEAQEPRKSSDKKTKKQKSSKLLSSDQAKYSKNSAIQQSKQPKNGKPENDLKLKEDNLVGKSSDTSSSPQKTRDGDAKISHVDSQPASAWNDSETDQVKYDTRLIGSDSGLNSQIQSCQRAWKVATSFKAKSLLEIQEEEQKSAHIEPAVSEISTAINSMSLSTPWAGVVSNLDPKASRETHKDSMKSEPVEKHENLLNLRSRKSQLHDLLAEDDMEKSGAGVVRVSDSIQIASSPQVVATQAEPMDDNFIEAKDTKKSRKKSAKSKGVGIKASSSVPSADVPVGSSPIEKVKISRQTQQEKDAMPAIPSGPSFGDFVLWKGEAATVAPAPAWSSDSGKFPKPTSLRDIQKEQERKISAAQHSHQIPTPQKAQPTQVGRSSSSSTPSRALSASSPSKVASSPLQNTPSQSKYGGDDELFWGPIESKQENQQVDVHLGSHGSWGNRNTPEKAAAAAASTGLLSRQKSSSGRADTASTGFLSRQKSSSGKADYLSPLPAQSSQKGKQDTVTKHSEAMDFCDWCERECVRLLGTKDTSFLEFCLKQSRSEAELLLIENLGSYDPDHDFIDQFLNYKELLPADVLEIAFQSQNNRKVFAVAAREVNSGHAGRNLDLDAPVGGDGSAKGGGKKKGKKGKKVSPSVLGFNVVSNRIMMGEIQTVED 1746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2763378 2772571 + Cp4.1LG07g04280.1 Cpe07g00430 472237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 1075 1183 - -
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 1446 1498 - -
Cpe07g00430 1746 CDD GYF 590 647 IPR003169 GO:0005515
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 446 477 - -
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 1131 1145 - -
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 1545 1591 - -
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 1109 1130 - -
Cpe07g00430 1746 SMART gyf_5 591 646 IPR003169 GO:0005515
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 405 424 - -
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 1 282 - -
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 375 396 - -
Cpe07g00430 1746 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 878 - -
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 1431 1445 - -
Cpe07g00430 1746 Pfam GYF domain 593 631 IPR003169 GO:0005515
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 485 559 - -
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 1259 1280 - -
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 247 282 - -
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 374 559 - -
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 1320 1401 - -
Cpe07g00430 1746 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 878 - -
Cpe07g00430 1746 ProSiteProfiles GYF domain profile. 590 641 IPR003169 GO:0005515
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 10 33 - -
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 1522 1594 - -
Cpe07g00430 1746 SUPERFAMILY GYF domain 581 647 IPR035445 -
Cpe07g00430 1746 PANTHER GYF DOMAIN-CONTAINING PROTEIN 884 1746 - -
Cpe07g00430 1746 Gene3D - 578 662 IPR035445 -
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 1694 1722 - -
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 1075 1108 - -
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 70 226 - -
Cpe07g00430 1746 PANTHER GYF DOMAIN-CONTAINING PROTEIN 884 1746 - -
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 425 440 - -
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 1414 1506 - -
Cpe07g00430 1746 MobiDBLite consensus disorder prediction 1262 1280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00430 - - - csv:101216765 1536.93
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00430 Cpe11g00193 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00430 Cpe-Chr7:2763378 Cpe17g00925 Cpe-Chr17:7147450 1.82E-20 dispersed
Cpe11g00193 Cpe-Chr11:1042038 Cpe07g00430 Cpe-Chr7:2763378 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g930 Blo01g01558 . Bda01g00536 Bda03g00257 Bpe02g00397 Bpe04g00211 Bma04g00206 Bma01g02315 Cmo05g00241 Cmo12g00428 . . . Car12g00452 Sed11g1026 . Cpe07g00430 Bhi04g00258 Tan02g1949 Cmetu03g2269 . . . Lcy13g1995 Cla08g01498 Cam08g1988 Cec08g1563 Cco08g1700 Clacu08g1678 . Cre08g1461 Cone4ag1904 Cone7ag1818 . . . . . Cme03g01966 . . . . . . . . . . . Cma12g00478 Cma05g00232 Car05g00194 . Cpe11g00193 . . . . . . . . . . . . . . . Lsi08g01403 Csa02g02043 Chy03g01470 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004078 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00430 Cpe_Chr07 FPKM 3.90467 4.905717 3.976887 4.370899 4.250156 4.46413 4.822898 3.94494 3.620245 3.884035