Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00434 ATGGTATCGGCAGAGAACAATTCTCCAACGGCGGCGCATACGGCATCTTCCTCGCAAGGAGTTGAACTCGAGATCATCGACGCCGTGGCTCCGCTGAAGAAGAAGCGGAATCTACCAGGAATGCCAGATCCTACGGCGGAGGTGATAGCTCTGTCGCCGAAATCGCTTCTAGCTACGAACCGATTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGATCAGAACTTGCAGCTTCACCGACGCGGCCACAACTTGCCTTGGAAGCTCCGACAGCGGACGAGTAATGAGATTCGTAAACGAGTTTACGTCTGTCCCGAGGCGTCTTGTGTCCATCACAATCCGGCTAGGGCACTCGGCGATCTCACCGGTATCAAAAAGCACTACTCCAGAAAGCACTGTGAGAAAAAGTGGAAGTGCGAGCGGTGCTCGAAGAAGTACGCCGTTCAATCGGACTGGAAGGCGCATATGAAAACCTGCGGAACAAGAGAGTATAGATGCGATTGCGGAACTTTGTTTTCTAGGAGAGATAGTTTCATCACGCATCGAGCCTTCTGCGACGCTTTGGTGTTCGCTAGCACGAATTCCAACGCGATGGTCCCCGCGGCAGCGGCAGTTGGTTCTTCGCCACCGGCGCCGCCACTGACGCCATCTACCACCGTGCTGTCTCCTGCTTTATCGATTCAAAGCTCAGAACCACCGGACAATCCCATCGGACCTCCGCCATTAACACCGCCAGTCACAGGCCTAACCTCACCCACCGCCTCCAACATAACCAACCCAACGAACGGCTGTGGCATCAGTGGTGGTACAAGCGTTTTCGCTGGTGTATTTGCTTCTCCTCCTATTAGTGCCCAAAATCCACCCCATCAAATCACCACCTCCGGCAACCGGTCAGACGGCGTCAATAATCCCCAAACCACCGCCATTGAACCCACATCGCTCTCTCTCTCAATGTCTCTCTTCCTCTCCTGCACAGCCTCAGCCTCGGGCTCATCCCTCTTTCAGGAACATCCACCACATTACTCCTCATCACCCCAGCCTGCCGCCATGTCCGCCACCGCTTTACTACAGAAGGCTGCCCAAATGGGCGTCACCGCCTCCAACGCCGCCTCGTTTCTCCGAGGCTCCGGGCTCTCAATATCGCCATCTCCCAGCCAAGCCACTTTTCCCTCCATGACGGCTGGGCTGGAACTTGGATTTGGAAACGAGCCTGCCACACGAGATCTCCTTGGACTTGGCATGGGCGGCGCAACCCCCGGCAGCGGTTTTTCGGGTCTTTTTACGTCCTTTGGTGAAGCTGCTGCACCTTACGGCGGCGGCGGGAGTAATGGTTCGTAA 1341 55.7 MVSAENNSPTAAHTASSSQGVELEIIDAVAPLKKKRNLPGMPDPTAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYVCPEASCVHHNPARALGDLTGIKKHYSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYRCDCGTLFSRRDSFITHRAFCDALVFASTNSNAMVPAAAAVGSSPPAPPLTPSTTVLSPALSIQSSEPPDNPIGPPPLTPPVTGLTSPTASNITNPTNGCGISGGTSVFAGVFASPPISAQNPPHQITTSGNRSDGVNNPQTTAIEPTSLSLSMSLFLSCTASASGSSLFQEHPPHYSSSPQPAAMSATALLQKAAQMGVTASNAASFLRGSGLSISPSPSQATFPSMTAGLELGFGNEPATRDLLGLGMGGATPGSGFSGLFTSFGEAAAPYGGGGSNGS 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2791390 2794366 + Cp4.1LG07g04270.1 Cpe07g00434 472241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00434 446 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 423 - -
Cpe07g00434 446 MobiDBLite consensus disorder prediction 284 304 - -
Cpe07g00434 446 Pfam Zinc-finger of C2H2 type 62 84 - -
Cpe07g00434 446 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Cpe07g00434 446 Gene3D Classic Zinc Finger 116 193 - -
Cpe07g00434 446 MobiDBLite consensus disorder prediction 226 245 - -
Cpe07g00434 446 Gene3D Classic Zinc Finger 43 110 - -
Cpe07g00434 446 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Cpe07g00434 446 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Cpe07g00434 446 SMART c2h2final6 138 158 IPR013087 -
Cpe07g00434 446 SMART c2h2final6 103 133 IPR013087 -
Cpe07g00434 446 SMART c2h2final6 62 84 IPR013087 -
Cpe07g00434 446 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 3 423 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00139 Cpe07g00434 CCT
Cpe02g00139 Cpe07g00434 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00434 Cpe-Chr7:2791390 Cpe10g00600 Cpe-Chr10:3504977 1.12E-124 dispersed
Cpe20g00169 Cpe-Chr20:959200 Cpe07g00434 Cpe-Chr7:2791390 3.00E-74 dispersed
Cpe10g00598 Cpe-Chr10:3500010 Cpe07g00434 Cpe-Chr7:2791390 6.19E-127 wgd
Cpe19g00801 Cpe-Chr19:6035762 Cpe07g00434 Cpe-Chr7:2791390 5.33E-108 wgd
Cpe02g00139 Cpe-Chr2:691915 Cpe07g00434 Cpe-Chr7:2791390 2.91E-146 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49740 PF12874 zf-met 0.0031 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00434 K25869 - cmo:103487955 624.009