Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe07g00434 | ATGGTATCGGCAGAGAACAATTCTCCAACGGCGGCGCATACGGCATCTTCCTCGCAAGGAGTTGAACTCGAGATCATCGACGCCGTGGCTCCGCTGAAGAAGAAGCGGAATCTACCAGGAATGCCAGATCCTACGGCGGAGGTGATAGCTCTGTCGCCGAAATCGCTTCTAGCTACGAACCGATTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGATCAGAACTTGCAGCTTCACCGACGCGGCCACAACTTGCCTTGGAAGCTCCGACAGCGGACGAGTAATGAGATTCGTAAACGAGTTTACGTCTGTCCCGAGGCGTCTTGTGTCCATCACAATCCGGCTAGGGCACTCGGCGATCTCACCGGTATCAAAAAGCACTACTCCAGAAAGCACTGTGAGAAAAAGTGGAAGTGCGAGCGGTGCTCGAAGAAGTACGCCGTTCAATCGGACTGGAAGGCGCATATGAAAACCTGCGGAACAAGAGAGTATAGATGCGATTGCGGAACTTTGTTTTCTAGGAGAGATAGTTTCATCACGCATCGAGCCTTCTGCGACGCTTTGGTGTTCGCTAGCACGAATTCCAACGCGATGGTCCCCGCGGCAGCGGCAGTTGGTTCTTCGCCACCGGCGCCGCCACTGACGCCATCTACCACCGTGCTGTCTCCTGCTTTATCGATTCAAAGCTCAGAACCACCGGACAATCCCATCGGACCTCCGCCATTAACACCGCCAGTCACAGGCCTAACCTCACCCACCGCCTCCAACATAACCAACCCAACGAACGGCTGTGGCATCAGTGGTGGTACAAGCGTTTTCGCTGGTGTATTTGCTTCTCCTCCTATTAGTGCCCAAAATCCACCCCATCAAATCACCACCTCCGGCAACCGGTCAGACGGCGTCAATAATCCCCAAACCACCGCCATTGAACCCACATCGCTCTCTCTCTCAATGTCTCTCTTCCTCTCCTGCACAGCCTCAGCCTCGGGCTCATCCCTCTTTCAGGAACATCCACCACATTACTCCTCATCACCCCAGCCTGCCGCCATGTCCGCCACCGCTTTACTACAGAAGGCTGCCCAAATGGGCGTCACCGCCTCCAACGCCGCCTCGTTTCTCCGAGGCTCCGGGCTCTCAATATCGCCATCTCCCAGCCAAGCCACTTTTCCCTCCATGACGGCTGGGCTGGAACTTGGATTTGGAAACGAGCCTGCCACACGAGATCTCCTTGGACTTGGCATGGGCGGCGCAACCCCCGGCAGCGGTTTTTCGGGTCTTTTTACGTCCTTTGGTGAAGCTGCTGCACCTTACGGCGGCGGCGGGAGTAATGGTTCGTAA | 1341 | 55.7 | MVSAENNSPTAAHTASSSQGVELEIIDAVAPLKKKRNLPGMPDPTAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYVCPEASCVHHNPARALGDLTGIKKHYSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYRCDCGTLFSRRDSFITHRAFCDALVFASTNSNAMVPAAAAVGSSPPAPPLTPSTTVLSPALSIQSSEPPDNPIGPPPLTPPVTGLTSPTASNITNPTNGCGISGGTSVFAGVFASPPISAQNPPHQITTSGNRSDGVNNPQTTAIEPTSLSLSMSLFLSCTASASGSSLFQEHPPHYSSSPQPAAMSATALLQKAAQMGVTASNAASFLRGSGLSISPSPSQATFPSMTAGLELGFGNEPATRDLLGLGMGGATPGSGFSGLFTSFGEAAAPYGGGGSNGS | 446 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2791390 | 2794366 | + | Cp4.1LG07g04270.1 | Cpe07g00434 | 472241 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe07g00434 | 446 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 3 | 423 | - | - | |
Cpe07g00434 | 446 | MobiDBLite | consensus disorder prediction | 284 | 304 | - | - | |
Cpe07g00434 | 446 | Pfam | Zinc-finger of C2H2 type | 62 | 84 | - | - | |
Cpe07g00434 | 446 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 64 | 84 | IPR013087 | - | |
Cpe07g00434 | 446 | Gene3D | Classic Zinc Finger | 116 | 193 | - | - | |
Cpe07g00434 | 446 | MobiDBLite | consensus disorder prediction | 226 | 245 | - | - | |
Cpe07g00434 | 446 | Gene3D | Classic Zinc Finger | 43 | 110 | - | - | |
Cpe07g00434 | 446 | SUPERFAMILY | beta-beta-alpha zinc fingers | 61 | 159 | IPR036236 | - | |
Cpe07g00434 | 446 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 62 | 84 | IPR013087 | - | |
Cpe07g00434 | 446 | SMART | c2h2final6 | 138 | 158 | IPR013087 | - | |
Cpe07g00434 | 446 | SMART | c2h2final6 | 103 | 133 | IPR013087 | - | |
Cpe07g00434 | 446 | SMART | c2h2final6 | 62 | 84 | IPR013087 | - | |
Cpe07g00434 | 446 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 2-LIKE | 3 | 423 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe02g00139 | Cpe07g00434 | CCT | |
Cpe02g00139 | Cpe07g00434 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe07g00434 | Cpe-Chr7:2791390 | Cpe10g00600 | Cpe-Chr10:3504977 | 1.12E-124 | dispersed | |
Cpe20g00169 | Cpe-Chr20:959200 | Cpe07g00434 | Cpe-Chr7:2791390 | 3.00E-74 | dispersed | |
Cpe10g00598 | Cpe-Chr10:3500010 | Cpe07g00434 | Cpe-Chr7:2791390 | 6.19E-127 | wgd | |
Cpe19g00801 | Cpe-Chr19:6035762 | Cpe07g00434 | Cpe-Chr7:2791390 | 5.33E-108 | wgd | |
Cpe02g00139 | Cpe-Chr2:691915 | Cpe07g00434 | Cpe-Chr7:2791390 | 2.91E-146 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49740 | PF12874 | zf-met | 0.0031 | CL0361 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe07g00434 | K25869 | - | cmo:103487955 | 624.009 |