Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00435 ATGAAAATGAAGCTTGGATCCAAGAAATGGAAATCCATCGTCCCTCGTTTTAAAGGAAAATCATCAGCTCCCTCGTTTTCTCTAGTTTCCAAATCTAAGTCGGTTAAATATTGTCCAGACAAAACGCCGGTCTATCTAAATGTGTACGATTTAACCCCGATGAATGGTTATGTCTATTGGGCAGGCCTTGGTATCTTTCACTCTGGTGTAGAAGTCCATGGTGTAGAATATGCATTTGGAGCTCATGACTATCCAACCAGTGGCGTTTTTGAAGTTGAACCTCGACAATGCCCCGGCTTCAAATTCAGGAGGTCAATATTGATTGGCTCGACCTGCCTCAATCGTCATGAAGTCAGAGAGTTCATGGAGCAACGCTCTTCGAGCTACCATGGTGATACATATCACCTCATCGTGAAGAACTGTAATCATTTCTGCAAGGACGTCTGTCATCAGTTGACTGGGAAATCAATTCCGAAATGGGTAAATCGACTCGCTAAAATAGGTTCCGTTTGTAATTGCATACTTCCCGACTCCCTTAGAATATCTGCCGTAAGACACGATCCCACGTACCCACCATATGAGACCGAGAGGACGAAGCTGAGGAATGTTTCCAGTTGCTTGTCTACTATATCAAGTCAGCAGAAGCAGCTGTCTTCATCTTCATTATTTCTACGGTCGCCATCGAAAGGCTGGGAATTGAAGAAGCCGAACGGCGATCCCCCTCATGCCTCAAAGGATAGGGTAAGCTGTAAGCTGGACGTCGTCGTCATTCACTAA 777 44.92 MKMKLGSKKWKSIVPRFKGKSSAPSFSLVSKSKSVKYCPDKTPVYLNVYDLTPMNGYVYWAGLGIFHSGVEVHGVEYAFGAHDYPTSGVFEVEPRQCPGFKFRRSILIGSTCLNRHEVREFMEQRSSSYHGDTYHLIVKNCNHFCKDVCHQLTGKSIPKWVNRLAKIGSVCNCILPDSLRISAVRHDPTYPPYETERTKLRNVSSCLSTISSQQKQLSSSSLFLRSPSKGWELKKPNGDPPHASKDRVSCKLDVVVIH 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2795539 2802033 + Cp4.1LG07g04300.1 Cpe07g00435 472242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00435 258 ProSiteProfiles PPPDE domain profile. 42 179 IPR008580 GO:0008233
Cpe07g00435 258 PANTHER DESUMOYLATING ISOPEPTIDASE 18 237 IPR008580 GO:0008233
Cpe07g00435 258 SMART DUF862_2a 42 180 IPR008580 GO:0008233
Cpe07g00435 258 Pfam PPPDE putative peptidase domain 43 177 IPR008580 GO:0008233
Cpe07g00435 258 PANTHER DESI-LIKE PROTEIN 18 237 - -
Cpe07g00435 258 Gene3D PPPDE domains 37 185 IPR042266 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00435 K22763 DESI2, PPPDE1; deubiquitinase DESI2 [EC:3.4.19.12] - csv:101219130 409.838
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00308 Cpe-Chr6:1704933 Cpe07g00435 Cpe-Chr7:2795539 8.04E-75 dispersed
Cpe07g00315 Cpe-Chr7:2034901 Cpe07g00435 Cpe-Chr7:2795539 1.16E-74 dispersed
Cpe12g00768 Cpe-Chr12:6995924 Cpe07g00435 Cpe-Chr7:2795539 9.57E-61 dispersed
Cpe17g00630 Cpe-Chr17:5161391 Cpe07g00435 Cpe-Chr7:2795539 4.13E-68 dispersed
Cpe05g00229 Cpe-Chr5:1295155 Cpe07g00435 Cpe-Chr7:2795539 2.00E-82 transposed
Cpe13g00251 Cpe-Chr13:1960706 Cpe07g00435 Cpe-Chr7:2795539 1.37E-82 transposed
Cpe16g00221 Cpe-Chr16:4367950 Cpe07g00435 Cpe-Chr7:2795539 5.40E-70 wgd
Cpe04g00245 Cpe-Chr4:3067201 Cpe07g00435 Cpe-Chr7:2795539 8.56E-63 wgd
Cpe05g01237 Cpe-Chr5:8663388 Cpe07g00435 Cpe-Chr7:2795539 3.99E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g904 . . . . . . . . . . . . . Car12g00456 Sed04g3587 . Cpe07g00435 Bhi04g00266 Tan02g0834 Cmetu01g1929 . Hepe02g0532 . Lcy13g2001 Cla08g01507 Cam08g1995 Cec08g1570 Cco08g1707 Clacu08g1685 . Cre08g1468 Cone4ag1896 Cone7ag1808 Cone17ag1325 Cone20ag0151 . . . Cme03g01972 Blo17g00810 Blo18g00822 Bda08g01294 Bda01g01488 Bpe02g01684 Bpe05g00082 Bma01g00768 . . . . Cma12g00485 . . . . . . . . . . . . . . . . . . . Lsi08g01411 Csa02g02035 Chy03g01478 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000619 5 5 3 1 3 3 4 3 3 3 3 2 4 3 3 2 2 6 4 2 3 3 3 3 3 3 3 11 5 2 103
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00435 Cpe_Chr07 FPKM 11.697531 13.222281 5.810306 4.640038 3.451895 4.786698 2.242198 9.682036 15.646018 10.210037