Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00436 ATGGCGTCCGAGCTCCAGCAATTGAGGTTCGACCCACCCCAATCCAACGCATCCGATGAATCCTCTGCCAGGGATGATCGCCCATTGTTGAACCCCGATTCTGGCGCCGTCGCCGACCAGGATTCCGACGATATCCACCTCAAATATGCTCCGTTTTCACGTCGAGATGCTTACGGGACCATGGGCCGAGGGGAGCTGCCGTGGATGGAGAAGGTGCTGCTCGGAATGGCGCTCATTACGATCGTTCCCATACGAGTGGTTTTTGGAATGAGTTTGCTGTTTCTCTATTACATGATTTGCAGAATTTGTACGTTGCTTTATGATCCAAATAGGGAGACGGATGAGCAGGAGGATTACGCGCATATGGTGGGATGGAGGAGGTCCGTGATTGTTTGGTCTGGAAGATTCGTGTCCAGAGCTATGTTATTCGTGTTAGGGTTTTATTGGATTTCGGAAGTTAATCGAATCCCACCGAATGAGAACAAGTCAACTAACGAGAACGAGGGGCAAGAGAATTCCCAAGAGTCTGAAAGACCGGGGGTTATCATCAGCAACCATGTATCATATTTGGATATTTTGTATCATATGTCTTCTTCCTTTCCCAGCTTTGTTGCTAAGAGATCAGTGGCTAAACTTCCTCTAGTTGGTATTATCAGCAAGTGCCTTGGCTGTGTTTATGTTCAACGAGAGTCAAAGACAACTGAATCCAAGGGTGTTTCAGGTGTTGTGAGTGAAAGAATTCGAGAAGCTGTGAAGAATAGCTCTGCTCCCATGATGATGCTTTTTCCAGACCAATTGAAGGTTCCAAAGATAGCTTTCCAGAAGTTCCAAGCTTTGGGGAAAGTGAAAAATGAGGTTGAGAATGGGGAGATTCGTATTGAAGACTTGCTAAAGGAGTTGCCTGTGCCTGAAAGTCAATTTCAAGACCAGCTATCATCTGAGAGGGACCCATTCTTGGACTTCAAGGTCGTAAAGATCTATTCTAAGGCTAAAATTCTTGCCCAAGTGGTTGTTTCAGATTTGGATCTTTCTAACAGTGCTTGGCATTTTGAGAAGAAACGTTTGGTAAGGCTAGAAGATTGGGAGGATGGCTTGGATAAGGAAGGAACAACTACCAATGGGGAGTATCTCCTACCATTCAAAACGGGGGCATTTTTGTCGAAAGCTCCTGTTCTTCCATTGATTTTAAGATATCCGTATCAGAGATTTAGTTTGGCCTGGGAATCAATGGCTGGAGGGCGTCATTTTTTACTTCTTCTCTGTCAATTTGTAAATCACTTGGAGGTAATAAGATTGCCTGTCTACGTCCCATCACAAGAAGAAAAGGATGATCCTAAGCTTTATGCTGGTAATATCAGAAGGTTTATGGCCAAAGAGGGAAATATGCTGCTTTCGGATATTGGGCTCCCAGAGAAGCGTGTTTATCTTGCTGCTCTGAATGGTAATAATAACATCCGTAGTGTTTTGCATCAGAAAGACGACTGA 1485 44.71 MASELQQLRFDPPQSNASDESSARDDRPLLNPDSGAVADQDSDDIHLKYAPFSRRDAYGTMGRGELPWMEKVLLGMALITIVPIRVVFGMSLLFLYYMICRICTLLYDPNRETDEQEDYAHMVGWRRSVIVWSGRFVSRAMLFVLGFYWISEVNRIPPNENKSTNENEGQENSQESERPGVIISNHVSYLDILYHMSSSFPSFVAKRSVAKLPLVGIISKCLGCVYVQRESKTTESKGVSGVVSERIREAVKNSSAPMMMLFPDQLKVPKIAFQKFQALGKVKNEVENGEIRIEDLLKELPVPESQFQDQLSSERDPFLDFKVVKIYSKAKILAQVVVSDLDLSNSAWHFEKKRLVRLEDWEDGLDKEGTTTNGEYLLPFKTGAFLSKAPVLPLILRYPYQRFSLAWESMAGGRHFLLLLCQFVNHLEVIRLPVYVPSQEEKDDPKLYAGNIRRFMAKEGNMLLSDIGLPEKRVYLAALNGNNNIRSVLHQKDD 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2799821 2806880 - Cp4.1LG07g04390.1 Cpe07g00436 472243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00436 494 MobiDBLite consensus disorder prediction 1 40 - -
Cpe07g00436 494 PANTHER PHOSPHOLIPID ACYLTRANSFERASE 14 265 - -
Cpe07g00436 494 PANTHER PHOSPHOLIPID/GLYCEROL ACYLTRANSFERASE FAMILY PROTEIN-RELATED 367 494 - -
Cpe07g00436 494 SMART plsc_2 180 399 IPR002123 GO:0016746
Cpe07g00436 494 MobiDBLite consensus disorder prediction 1 19 - -
Cpe07g00436 494 CDD LPLAT_LPCAT1-like 139 473 IPR045252 GO:0008374
Cpe07g00436 494 PANTHER PHOSPHOLIPID/GLYCEROL ACYLTRANSFERASE FAMILY PROTEIN-RELATED 14 265 - -
Cpe07g00436 494 Pfam Acyltransferase 168 263 IPR002123 GO:0016746
Cpe07g00436 494 Coils Coil 279 299 - -
Cpe07g00436 494 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 162 232 - -
Cpe07g00436 494 PANTHER PHOSPHOLIPID ACYLTRANSFERASE 367 494 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00436 K13510 LPCAT1_2; lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase [EC:2.3.1.23 2.3.1.67] - csv:101218421 466.463
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00436 Cpe11g00189 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00436 Cpe-Chr7:2799821 Cpe08g00502 Cpe-Chr8:3249942 1.64E-10 dispersed
Cpe11g00189 Cpe-Chr11:1024844 Cpe07g00436 Cpe-Chr7:2799821 1.50E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g903 . . . . . . . . Cmo05g00236 Cmo12g00433 . . . Car12g00457 Sed11g1018 . Cpe07g00436 Bhi04g00268 Tan02g1940 Cmetu03g1115 . Hepe10g0661 . Lcy13g2002 Cla08g01508 Cam08g1996 Cec08g1571 Cco08g1708 Clacu08g1686 . Cre08g1469 Cone4ag1895 Cone7ag1807 . . . . . Cme03g01973 Blo17g00811 Blo18g00823 Bda08g01295 Bda01g01487 Bpe02g01683 Bpe05g00081 Bma01g00769 Bma05g00110 . . . Cma12g00486 Cma05g00227 Car05g00189 . Cpe11g00189 . . . . . . . . . . . . . . . Lsi08g01412 Csa02g02034 Chy03g01479 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003903 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00436 Cpe_Chr07 FPKM 40.890892 38.334927 38.397095 36.968861 38.242203 41.526409 33.92197 50.206318 51.2435 50.407051