Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00444 ATGGCGAGCGGGTTTGGGGAATCAACAAGTAGGCAACCTCAAAGCCCTTCGTGTTCCGACAACAATGGTGATGCTAGTAATTTTGAGTGTAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTATGTGGTCATCTTTTTTGTTGGCCATGCCTTTACAAGTGGCTGCACATTCATTCCCATCCCCAGGAATGTCCAGTTTGTAAAGCTATGATAGAAGAGCAAAAATTGGTTCCCTTATATGGTAGGGGAAAGACATCGACTGACCCGAGATCGAAAAGTATTCCGGGAGTTAATATTCCTAATCGTCCTGCGGGACAGAGGCCAGAAGCAGCAGGCCCTCCCCCAGAGCCAAATCCTTTTGCTCACAATGGATTTGGATTCATGGGAGGTCTTGGAGGGTTTGCTCCAATGGCATCAACAAGGTTTGGTAATTTCACATTGTCTGCGGCCTTTGGTGGTCTTGTCCCATCTTTGTTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCGAACTTTCCATATGGGTTTCCTAACATGTTTCATGGTAGCCATGGCCATGGCCATGCTCATGCTCATGGATACTATCACCATCTCCGTCAAGAAGTTTCAGAATATACACAGATGGGTTTCTGCTGCACATGGTACTACCAGAAACTTGTTCATCAGATTGTGTTTAGCTATGGTTCTATCCATGTTCGTGAAATACGTCGTTCTGATAGAAAGGAGCAGGACAAGGATCAGGATCATCAACCGTTGATACCATGTTGGGAACTAGTAGCTAAAGCTACTCACCACCGGCCGGTCACCATCTCTCTCATTCTCACCTTACACATAAAAACCCATCTCTTACCTTTCCTCCTTCCTCACTCCCTCTCGCCGGCCTCCGCCATGTTTAAACCTCCGGCCGCCCTTCTCTTCTTCATTTTCTCCTTAACTGCCGTCAATGCCACCGTTCTATTCAAGGAGGCACCCCAATTCTACAACTCCCCTGACTGCCCCTCTGTTTTCGAGGGCGAGGATGATGGCCATCGTCTCTGCTCCGACGATGGCGTCCACGTCGCAATGACATTGGACACGGCTTACATCCGGGGCTCCATGGCGGCGATCCTCTCCGTTTTGCAACATTCGTCCTGTCCCCAAAATGTAATCTTCCATTTTGTTTCCTCTGCTTCTGCAAATGCTCTGTCTCTCCACGCCACCATTTCCTCCTCCTTTCCTTACCTGAAATTCAAAATCTACCCCTTCGATGATGTCGCCGTGTCCCGTTTGATCTCCACCTCCATCCGCTCTGCCTTGGATTGTCCGTTGAACTATGCTCGTAGCTACTTGGCTGACCTCCTCCCCCTCTGTGTTCGCCGTGTTGTCTATCTCGATTCCGATATAATCCTCGTCGACGACATCGCTAACCTCGCCAACACTCCTCTTAACGACGCTGTCCTCGCTGCCCCTGAGTACTGCAACGCCAATTTCACGGCCTATTTCACTCCCACTTTCTGGTCCAATCCCTCTCTGTCTCTCACCTTCGCTAATCGCCACCCCTGTTACTTCAATACCGGTGTCATGGTCATCGACCTCTCCCGGTGGCGCCTCGGCGACTTCACCGCCGAAATCGAAGAATGGATGGAGCTTCAGAAGAGAATGAGGATCTACGAGCTTGGATCTCTACCGCCATTCATGCTTGTTTTCGCTGGAAACATCGTCCCCGTCGACCACCGGTGGAACCAGCACGGCCTCGGCGGGGATAATTTCCGGGGACTCTGCCGGGATCTACACCCGGGTCCGGTGAGCCTGTTGCATTGGAGTGGAAAGGGGAAGCCATGGGCCCGAGTGGATGCGAACCGGCCGTGTCCGTTGGACTCTCTGTGGGTCCCTTATGATCTGTTGCAGACTCCATTTTCGTTGGATTCTTGA 1938 50.57 MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAMIEEQKLVPLYGRGKTSTDPRSKSIPGVNIPNRPAGQRPEAAGPPPEPNPFAHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHGHAHAHGYYHHLRQEVSEYTQMGFCCTWYYQKLVHQIVFSYGSIHVREIRRSDRKEQDKDQDHQPLIPCWELVAKATHHRPVTISLILTLHIKTHLLPFLLPHSLSPASAMFKPPAALLFFIFSLTAVNATVLFKEAPQFYNSPDCPSVFEGEDDGHRLCSDDGVHVAMTLDTAYIRGSMAAILSVLQHSSCPQNVIFHFVSSASANALSLHATISSSFPYLKFKIYPFDDVAVSRLISTSIRSALDCPLNYARSYLADLLPLCVRRVVYLDSDIILVDDIANLANTPLNDAVLAAPEYCNANFTAYFTPTFWSNPSLSLTFANRHPCYFNTGVMVIDLSRWRLGDFTAEIEEWMELQKRMRIYELGSLPPFMLVFAGNIVPVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARVDANRPCPLDSLWVPYDLLQTPFSLDS 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2853315 2857068 + Cp4.1LG07g04500.1 Cpe07g00444 472251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00444 645 SUPERFAMILY Nucleotide-diphospho-sugar transferases 360 636 IPR029044 -
Cpe07g00444 645 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Cpe07g00444 645 MobiDBLite consensus disorder prediction 1 20 - -
Cpe07g00444 645 CDD RING-HC_AtRMA_like 28 72 - -
Cpe07g00444 645 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Cpe07g00444 645 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 361 626 IPR029044 -
Cpe07g00444 645 Pfam Zinc finger, C3HC4 type (RING finger) 27 76 - -
Cpe07g00444 645 MobiDBLite consensus disorder prediction 84 121 - -
Cpe07g00444 645 Pfam Glycosyl transferase family 8 361 618 IPR002495 GO:0016757
Cpe07g00444 645 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 84 IPR013083 -
Cpe07g00444 645 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 318 645 - -
Cpe07g00444 645 PANTHER GALACTURONOSYLTRANSFERASE-LIKE 1-RELATED 318 645 - -
Cpe07g00444 645 SMART ring_2 30 70 IPR001841 -
Cpe07g00444 645 SUPERFAMILY RING/U-box 26 83 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00145 Cpe07g00444 CCT
Cpe07g00444 Cpe11g00181 CCT
Cpe02g00145 Cpe07g00444 ECH
Cpe07g00444 Cpe11g00181 ECH
Cpe06g00125 Cpe07g00444 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00364 Cpe-Chr3:1952877 Cpe07g00444 Cpe-Chr7:2853315 1.19E-27 dispersed
Cpe03g00894 Cpe-Chr3:5696077 Cpe07g00444 Cpe-Chr7:2853315 7.49E-23 dispersed
Cpe07g00444 Cpe-Chr7:2853315 Cpe10g00391 Cpe-Chr10:2295222 0 dispersed
Cpe11g00182 Cpe-Chr11:984557 Cpe07g00444 Cpe-Chr7:2853315 8.86E-112 dispersed
Cpe15g00802 Cpe-Chr15:8037660 Cpe07g00444 Cpe-Chr7:2853315 6.61E-29 dispersed
Cpe20g00430 Cpe-Chr20:2466721 Cpe07g00444 Cpe-Chr7:2853315 6.69E-26 dispersed
Cpe10g00390 Cpe-Chr10:2290159 Cpe07g00444 Cpe-Chr7:2853315 5.18E-68 wgd
Cpe11g00181 Cpe-Chr11:982405 Cpe07g00444 Cpe-Chr7:2853315 0 wgd
Cpe19g00574 Cpe-Chr19:4819902 Cpe07g00444 Cpe-Chr7:2853315 3.47E-66 wgd
Cpe02g00145 Cpe-Chr2:724870 Cpe07g00444 Cpe-Chr7:2853315 0 wgd
Cpe06g00125 Cpe-Chr6:627456 Cpe07g00444 Cpe-Chr7:2853315 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00444 K20893 - csv:101218422 640.573