Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00452 ATGTTCACCTCCTCCCATCCCACCACTCCTCCTCCCCTCCCGGACCTCTCCTTGCACATAAGCCCGCCGTCAAATTCCGGCAGCACCGGCAGCGATCTCAGCCATGAAACTGCCACCGCCGCCGCTGGCTATTTTCTTCCACCTAAACCCCATATGGGTCTACCTCTTGAGCTTGAAACAAGCTTCAACAATGGCCGCCATTTTAACCACCACCTACCTCAAATCTATGGCCGCCATTTTAAAAGAGCTGCAAAAATGGGTATTAGAGCTCCAAGAATGAGATGGACTACAACGCTTCATGCTCATTTTGTCCACGCCGTTCAGCTGCTTGGCGGCCATGAAAGGGCAACACCAAAATCTGTTTTGGAGCTTATGAATGTCAAGGATCTAACCCTAGCTCATGTAAAGAGTCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAATCAACTGCCTTGAAGAACCAAAGACAAGAAGTTGATCCAAGTGGTGCTGAGATCTCTAACCCTATGTGGAAAAGCTCTGATCAAATGAACTTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGACGAGATGGAGTCAACATTACAACAACAACAACAATATTGGAAACAACCAGCAACAGCAACAGCAACAACAGCTGGACCGACACAAAGCGAGCATCGAAATCTCGAGCGGCGTGAAGAAGCAGAGGTTGGAAGGTAGCTGCTTGTCGTTGTGTGATCATCATCATGGCGGTGTGTATCATACAAATATTAATAAGCTAAACTTAGATATCACTCTTGGATGCCCAAATGCTCTTACAATTGAGTCTAATACTCACTCTTCATCTTCTGAACCTCCCCTTCTTAAATGCTAA 870 45.63 MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETATAAAGYFLPPKPHMGLPLELETSFNNGRHFNHHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQMNLFCSSMETNQEMTTRWSQHYNNNNNIGNNQQQQQQQQLDRHKASIEISSGVKKQRLEGSCLSLCDHHHGGVYHTNINKLNLDITLGCPNALTIESNTHSSSSEPPLLKC 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2891447 2893150 - Cp4.1LG07g04670.1 Cpe07g00452 472259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00452 289 MobiDBLite consensus disorder prediction 198 222 - -
Cpe07g00452 289 SUPERFAMILY Homeodomain-like 88 145 IPR009057 -
Cpe07g00452 289 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 10 271 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cpe07g00452 289 MobiDBLite consensus disorder prediction 19 34 - -
Cpe07g00452 289 MobiDBLite consensus disorder prediction 150 170 - -
Cpe07g00452 289 Gene3D - 90 147 - -
Cpe07g00452 289 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 91 144 IPR006447 GO:0003677
Cpe07g00452 289 MobiDBLite consensus disorder prediction 1 34 - -
Cpe07g00452 289 Pfam Myb-like DNA-binding domain 92 143 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00452 - - - cpep:111799190 555.829
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00150 Cpe07g00452 CCT
Cpe07g00452 Cpe11g00176 CCT
Cpe06g00132 Cpe07g00452 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00452 Cpe-Chr7:2891447 Cpe15g00191 Cpe-Chr15:1569966 7.05E-35 dispersed
Cpe11g00176 Cpe-Chr11:957338 Cpe07g00452 Cpe-Chr7:2891447 1.98E-89 wgd
Cpe02g00150 Cpe-Chr2:772129 Cpe07g00452 Cpe-Chr7:2891447 1.03E-38 wgd
Cpe06g00132 Cpe-Chr6:699448 Cpe07g00452 Cpe-Chr7:2891447 8.04E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g841 . Blo12g00936 . . . . . . Cmo05g00220 Cmo12g00449 . Cma09g00194 . Car12g00477 Sed01g2622 Cpe06g00132 Cpe07g00452 Bhi04g00296 Tan02g1912 Cmetu04g2692 . Hepe10g0690 . Lcy13g2020 Cla08g01528 Cam08g2020 Cec08g1594 Cco08g1731 Clacu08g1709 . Cre08g1490 Cone4ag1544 Cone7ag1407 Cone17ag1309 Cone20ag0163 Lsi04g01607 Csa03g04154 Chy04g00565 Cme03g01993 . Blo18g00828 . Bda01g01484 Bpe02g01679 . Bma01g00775 . . . Cmo09g00190 Cma12g00506 Cma05g00213 Car05g00175 Car09g00164 Cpe11g00176 Cpe02g00150 Bhi09g02029 . . . . Mch11g0241 . Cla05g01991 Cam05g2142 Cec05g2157 Cco05g2205 Clacu05g2133 Cmu05g2006 Cre05g2130 Lsi08g01429 Csa02g02010 Chy03g01499 Cme04g00674
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe15g00191 . 154 356 G2-like Transcription Factor Family AT5G16560 52.2 2.6e-42 170.2
Cpe05g00160 . 168 353 G2-like Transcription Factor Family AT5G16560 53.8 2.9e-41 166.8
Cpe07g00452 CCT,CST 13 152 G2-like Transcription Factor Family AT5G42630 58.3 3.1e-37 152.5
Cpe13g00409 CCT 20 255 G2-like Transcription Factor Family AT1G25550 50.6 3.6e-51 199.1
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT1G25550 52.2 2.5e-44 176.4
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT3G25790 51.8 1.0e-36 151.0
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT5G05090 54.4 2.2e-74 276.2
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT5G05090 53.9 2.3e-71 266.2
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 9.6e-70 260.8
Cpe03g00415 . 1 265 G2-like Transcription Factor Family AT5G05090 57.9 4.5e-67 251.9
Cpe03g01593 CST 12 313 G2-like Transcription Factor Family AT4G13640 56.5 9.0e-61 231.1
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe11g00707 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 4.7e-37 152.5
Cpe05g01028 CST 1 160 G2-like Transcription Factor Family AT1G79430 75.3 3.9e-58 222.6
Cpe08g00397 CST 26 196 G2-like Transcription Factor Family AT1G79430 56.5 1.5e-38 157.5
Cpe03g01593 CST 41 205 G2-like Transcription Factor Family AT1G79430 59.4 6.5e-37 152.1
Cpe10g00724 . 84 317 G2-like Transcription Factor Family AT2G01060 51.6 6.2e-52 201.4
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT3G10760 60.7 4.4e-88 322.0
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT3G10760 61.9 4.4e-88 322.0
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT3G10760 59.5 6.0e-85 311.6
Cpe03g00415 . 1 278 G2-like Transcription Factor Family AT3G10760 56.7 8.6e-76 281.2
Cpe08g01347 . 1 287 G2-like Transcription Factor Family AT2G40970 50.5 3.4e-61 232.3
Cpe19g00248 . 1 204 G2-like Transcription Factor Family AT2G40970 61.6 5.5e-59 224.9
Cpe03g00415 . 1 195 G2-like Transcription Factor Family AT2G40970 59.4 9.3e-59 224.2
Cpe10g01100 . 1 203 G2-like Transcription Factor Family AT2G40970 58.8 1.2e-58 223.8
Cpe05g00834 . 108 367 G2-like Transcription Factor Family AT4G28610 50.2 6.2e-52 202.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012530 0 1 0 0 0 1 3 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49744 PF00249 Myb_DNA-binding 1.20E-05 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00452 Cpe_Chr07 FPKM 1.606411 2.515747 0.574693 0.462497 0.242402 0.0 0.599018 0.317935 0.592144 0.269354