Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00464 ATGGAGGAAGCAACCACCGTGCCCTTTCAACCCCCGACTTTCGGTGACCTTATTACAATCTTGAGTATCGATGGAGGTGGAATTAGAGGAATCATTCCCGGAGTTATTTTGAATTTTCTCGAGTCTGAACTTCAGAGCGATGTCGCCGGAGGAAAAACGAGGGAATTCGACCTGGTTGACGGCGGCGTTGCTGCGAACAATCCGACGTTGGTGGCGATCGGGGAAGTGACGAAGGAGGTGATAAAAGAAAGTCCGGATTTTTATGCTATAAAGCCAATGGACTACAAGAGGTTTTTGGTTATATCGTTAGGAACCGGAGCTCCGAAGGCGGAAATGAAATACACGGCGGAGCAAGCGGCGGAGTGGGGGATGTTGGACTGGCTAACCAGCGGCGGCTCCACCCCAATTATCGATGTGTTTTCACAAGCAAGCTCGGATATGGTCGATCTTCATCTTTCTAGCGAGGTATCCTCAGTAGATGTGGCAACAGACAAGAATCTTAACGAACTTGTGAGGATCGGAGAAGGATTCGCCAAGCGGCTGTCCGATGAGCGGCGGCTCCGCCATGCAAGGTCGAGAGTGACAAAGATGATCAAGGCTCTATCGGGTCCAAAATACAACGGGAAGTATCTCCACAAGCTCCTCAAGGAAAAGCTAGGAGACACAAAATTGCAGCAAACATTAACCAACGTTGTTATCCCCACGTTCGACATCAAGCTCCTTCAACCGACCATCTTCTCCAGCTACGAGCTCAAGAACAAACCTTGTTTGAATGCGGCTGTCGCCGACATATGCATTTCAACTTCAGCTGCACCTACTTATCTTCCTGCTCATCATTTCAAAACTCGAGACATCGCCAATGGAAATCCTGATTTCTTCGCTATAAAACCAACCGATTACTCAAGATTTGTGGTAATATCATTGGGAACTGGCTGTCCAAAAGATGAAATGAAGTACACAGCAGAGAAAGCAGCCAAATGGGGGCTGTTGCAATGGCTGACTGCTAGCGGGTCAACGCCGATCATCGACGTGTTTTCTCATGCAAGCTCTGATATGGTCGATTTTCATCTCTCGGTCGTGTTCAAAGCCCTTCAATGCGAAAACAACTATCTTAGAATCCAGGACGATACGTTGAGCAGCGTGGTATCGTCGGTGGACATAGCCACGAAGAAGAACTTGGATGATCTTGTTGAGGTCGGTGAAAATTTGTTGAAGAAACCCGTGTCTAGAGTCAATTTGGAAACCGGTGTCTTTGAAGCTACTGATGCTGAAACTAATGAACAAGCTCTTACA 1293 47.56 MEEATTVPFQPPTFGDLITILSIDGGGIRGIIPGVILNFLESELQSDVAGGKTREFDLVDGGVAANNPTLVAIGEVTKEVIKESPDFYAIKPMDYKRFLVISLGTGAPKAEMKYTAEQAAEWGMLDWLTSGGSTPIIDVFSQASSDMVDLHLSSEVSSVDVATDKNLNELVRIGEGFAKRLSDERRLRHARSRVTKMIKALSGPKYNGKYLHKLLKEKLGDTKLQQTLTNVVIPTFDIKLLQPTIFSSYELKNKPCLNAAVADICISTSAAPTYLPAHHFKTRDIANGNPDFFAIKPTDYSRFVVISLGTGCPKDEMKYTAEKAAKWGLLQWLTASGSTPIIDVFSHASSDMVDFHLSVVFKALQCENNYLRIQDDTLSSVVSSVDIATKKNLDDLVEVGENLLKKPVSRVNLETGVFEATDAETNEQALT 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2982821 2992503 + Cp4.1LG07g04510.1 Cpe07g00464 472271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00464 431 PANTHER XYLOSE ISOMERASE 50 180 - -
Cpe07g00464 431 PANTHER XYLOSE ISOMERASE 192 285 - -
Cpe07g00464 431 SUPERFAMILY FabD/lysophospholipase-like 53 190 IPR016035 -
Cpe07g00464 431 PANTHER XYLOSE ISOMERASE 283 430 - -
Cpe07g00464 431 PANTHER PATATIN 192 285 - -
Cpe07g00464 431 PANTHER XYLOSE ISOMERASE 5 46 - -
Cpe07g00464 431 PANTHER PATATIN 50 180 - -
Cpe07g00464 431 SUPERFAMILY FabD/lysophospholipase-like 199 416 IPR016035 -
Cpe07g00464 431 PANTHER PATATIN 5 46 - -
Cpe07g00464 431 PANTHER PATATIN 283 430 - -
Cpe07g00464 431 Gene3D Cytosolic phospholipase A2 catalytic domain 49 192 - -
Cpe07g00464 431 Gene3D Cytosolic phospholipase A2 catalytic domain 12 48 - -
Cpe07g00464 431 Gene3D Cytosolic phospholipase A2 catalytic domain 193 431 - -
Cpe07g00464 431 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 21 295 IPR002641 GO:0006629
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00464 - - - csv:101220328 348.591
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00464 Cpe11g00168 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00464 Cpe-Chr7:2982821 Cpe11g00168 Cpe-Chr11:916752 6.14E-44 dispersed
Cpe11g00167 Cpe-Chr11:911945 Cpe07g00464 Cpe-Chr7:2982821 6.51E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g805 . . . . . . . . . Cmo12g00461 . . . Car12g00493 . . Cpe07g00464 . . . . . . . . . . . . . . . . . . . . . Cme03g02010 . . Bda08g01329 . . . . Bma05g00093 . . . Cma12g00520 . . . Cpe11g00168 . . . . . . . . . . . . . . . Lsi08g01448 . Chy03g01515 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0022255 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00464 Cpe_Chr07 FPKM 7.02193 5.708621 6.035633 6.206101 12.113489 11.793062 12.247544 7.206874 6.793751 6.240383