Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00470 ATGGGAATCGCTAATCTCTCATACGAGGAATGTCGTCGTAAGAGAGTCGAAGAAAACAAGAAGAGAATGGATGCCCTAAATCTGCCCTTGCTTTCTCAAGCTCTCATCGATTCTTCTCCTTCCAAATCCAAATCCAAATCCTCCCCTAGTAAACAGGCCAAGCATCGTGAGATGAAGAAACAACTGGTGGTAGTGAGGAGATCCAGTCGTGTAGCAAAACAACCAGGGCCTGTTTACGCTGAAGTTCTCGTCAATCGCGTGGCGATTCCTAAAAGATTCTCCAGCGCAAGAGATTATCCAGACCATTTTTTTGCTTCGGATGAAGCAAGAAAAAATGCGTTTGAAAGAGCTGAGCGATTACAATCTGTATTAGAGCCAAATTATCCCACCTTTATAAAGTCAATGGTTCGGTCTCATGTTAGCGGTTGTTTCTGGCTGGAGCACCTACCAACCAATGATGGAGTAATGACTTTAATAGATGAAGGTGGCGATGAGTATCCAATAATATATTTGGCGCGAAAGACAGGGTTTAGTGGAGGATGGAAGGGTTTTTCAGTTGCTCATAAATTGGCAGATGGGGATGCTGTGATTTTTCAACTCATTAAACCTACAACCTGCAAGGTGTACATCTTTCGAGTTGGTGACTTGAAAGAAGATAGCGATTCTAACAGCGATAACGGGAAGGAAGTGCACATAATGCAGAGGCTTGGTTTTGGAGTAAAAAGCAATCTCTCTGTCTTAAACGAAACCCTAAGAAGCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGACCATGGGGATCGCTAATCTCTCATACGAGGAATGCCGCCATAAGAGACTCGAAGAAAACAAGAAGCGGATGGAAGCCCTAAATCTGCCTTTGCTTTCTCAAGCTCTCCTCCATTCTTCCCCTTCCAAATCCTCGCCTAGTAAGCTCGCCAAGCCTCGCGTGACGCAGAAACAACTCGTAGTGGTGAGGAGATCCAGCCGCATAGCTAAACAATCCGCCCCCGTTTACGCCGAAGTTGTTGTAAATCGTGTGGTGATTCCTAGAAGGATCTCCAATGCTAGAGATCTTTCAAATCGAGTTTATTCTTCGGATGAAGCAAGAAAAAATGCCTTTGAAAGAGCTGAGCGATTACAATCTGGATTAGAGACGAATTATCCCAATTTTATAAGGTCGATGCTTCCATCTCATGTTAGTGGTGGATTCTGGCTGGGCCTTCCTTCTCATTTCTGCAAGACGCACCTTCCAAATCGCGATGGAATTGTGACATTAATAGATGAAGATGGAGATGAGTATCCAACAGTATATTTAGCACGAAAAACAGGACTTAGTGGCGGATGGAAGGGCTTTTCAGTTGCTCATAAATTGGCTGATGGGGATGCTGTGATTTTTCAATTCATTAAACCTACAACGTGCAAGATTTTTCCTATTACTTCTGTTTCAGGTGTACATCTTTAG 1479 43.34 MGIANLSYEECRRKRVEENKKRMDALNLPLLSQALIDSSPSKSKSKSSPSKQAKHREMKKQLVVVRRSSRVAKQPGPVYAEVLVNRVAIPKRFSSARDYPDHFFASDEARKNAFERAERLQSVLEPNYPTFIKSMVRSHVSGCFWLEHLPTNDGVMTLIDEGGDEYPIIYLARKTGFSGGWKGFSVAHKLADGDAVIFQLIKPTTCKVYIFRVGDLKEDSDSNSDNGKEVHIMQRLGFGVKSNLSVLNETLRSEEEEEEEEEEEEEEETMGIANLSYEECRHKRLEENKKRMEALNLPLLSQALLHSSPSKSSPSKLAKPRVTQKQLVVVRRSSRIAKQSAPVYAEVVVNRVVIPRRISNARDLSNRVYSSDEARKNAFERAERLQSGLETNYPNFIRSMLPSHVSGGFWLGLPSHFCKTHLPNRDGIVTLIDEDGDEYPTVYLARKTGLSGGWKGFSVAHKLADGDAVIFQFIKPTTCKIFPITSVSGVHL 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3015036 3022101 + Cp4.1LG07g05340.1 Cpe07g00470 472277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00470 492 MobiDBLite consensus disorder prediction 249 270 - -
Cpe07g00470 492 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 218 IPR044837 -
Cpe07g00470 492 MobiDBLite consensus disorder prediction 252 270 - -
Cpe07g00470 492 ProSiteProfiles B3 DNA-binding domain profile. 156 214 IPR003340 GO:0003677
Cpe07g00470 492 Coils Coil 241 268 - -
Cpe07g00470 492 Pfam B3 DNA binding domain 396 476 IPR003340 GO:0003677
Cpe07g00470 492 Gene3D - 105 216 IPR015300 -
Cpe07g00470 492 Gene3D - 371 487 IPR015300 -
Cpe07g00470 492 SUPERFAMILY DNA-binding pseudobarrel domain 390 482 IPR015300 -
Cpe07g00470 492 Coils Coil 275 295 - -
Cpe07g00470 492 PANTHER B3 DOMAIN-CONTAINING PROTEIN 2 218 - -
Cpe07g00470 492 SMART B3_2 396 485 IPR003340 GO:0003677
Cpe07g00470 492 SMART B3_2 131 214 IPR003340 GO:0003677
Cpe07g00470 492 MobiDBLite consensus disorder prediction 34 60 - -
Cpe07g00470 492 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 271 484 IPR044837 -
Cpe07g00470 492 CDD B3_DNA 394 479 IPR003340 GO:0003677
Cpe07g00470 492 ProSiteProfiles B3 DNA-binding domain profile. 396 488 IPR003340 GO:0003677
Cpe07g00470 492 PANTHER B3 DOMAIN-CONTAINING PROTEIN 271 484 - -
Cpe07g00470 492 SUPERFAMILY DNA-binding pseudobarrel domain 124 213 IPR015300 -
Cpe07g00470 492 CDD B3_DNA 129 212 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00470 Cpe-Chr7:3015036 Cpe06g00134 Cpe-Chr6:708192 3.10E-13 dispersed
Cpe01g00450 Cpe-Chr1:2603336 Cpe07g00470 Cpe-Chr7:3015036 2.87E-28 wgd
Cpe15g00494 Cpe-Chr15:5895248 Cpe07g00470 Cpe-Chr7:3015036 3.12E-59 wgd
Cpe04g00274 Cpe-Chr4:3411573 Cpe07g00470 Cpe-Chr7:3015036 4.14E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49748 PF02362 B3 1.00E-11 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00470 - - csv:101205473 354.755