Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00488 ATGAATTTCAAGGATTTTGGGAGTGACCCATCTGCTGGAAACGGCGGAGGAGGTGGGCGGCCTTCTGCTAACCATCCATTAGCGCGGCAATCATCTATCTACTCGCTGACATTCGATGAGTTTCAGAATGGGAATATTGTTGCTTCTGGTTTGCAACAGAGGCAGCAAACTCTTGGGGAGATGACACTTGAAGAATTTTTGTTGAGAGCTGGAGTTGTGAGAGAGGATACTCAATTGAATGGATGCCCCAACAATGGAGGATTCTTTGGCAATAACAATCATATTCCAATTCAATCTTCGAACTTATTGTTGAATGTTAATGGAGTTAGAGCACATCAGCCACAACCAATATTTCCAAAGCAGCCTACTGAGACCACATATGGGTCTCAGCTGCCTTTGTCTAGTGATGGGATTATGGGGCTTGCGGATCAAAGGTTGAGCTCAAATTTGATGCAAGGCTCTGCACTGCAGGGTGGAAGGATGGGAGTGGTTAGCTTAGCAGCTGGGGCTATGCCTGTTGCAACAGGATCTCCAGCAAACCAGCTATCATCTGATGGGATTGGAAAGAGCAATGGTGATACCTCGTCCTTGTCTCCGGTGCCTTATGCGCTTAATGGAGTGCGGGGGAGGAGATGTAATGGGACTCTGGACAGGGTTGTCGAGAGGAGGCAGCGCAGAATGATAAAGAACAGGGAGTCGGCTGCTCGATCGCGGGCTCGAAAGCAGGCAGAAATCATGGAAATGCACAAGAACCGGGTGTTGGATTTGGTTCTAAGTGGGTCGATCATAAGGACTTCGATCGATCGCTTTCGAACGAACGCAAAGCATGCGTTGTTCGATTCATACAGCTCCTCCACCCTCCTATGGCGCTGCTGCTGCTGCGACGACGGTCGAGTAAATGGCAATCCTGAAAGCAGGATTGAAGAGGCTTACACGATTGAGCTGGAAGCGGAGGTGGCGAAGCTAAAAGAGGAGAACCAAGAACTCCGGCAAAAACAGGCAGAAATCATGGAAATGCACAAGAACCGGGCATTGAAAGTAATGGATACACAACAAGGAACAAAGAAACGATGCTTAAGACGAACGCAGACTGCGGAGGTGGCGAAGCTAAAAGAGGAGAACCAAGAACTCCGGCAAAAACAGGCAGAAATCATGGAAATGCACAAGAACCGGGCATTGAAAGTAATGGATACACAACAAGGAACAAAGAAACGATGCTTAAGACGAACGCTGACTGGTGTTGGATTTGGTTCTAAGTGGGTCGATCATAAGGACTTCGATCGATCGCTTTCGAACGAACGCAAAGCATGCGTTGTTCGATTCATACAGCTCCTCCACCCTCCTATGGCGCTGCTGCTGCTGCGACGACGGTCGAGTAAATGGCAATCCTGA 1392 48.56 MNFKDFGSDPSAGNGGGGGRPSANHPLARQSSIYSLTFDEFQNGNIVASGLQQRQQTLGEMTLEEFLLRAGVVREDTQLNGCPNNGGFFGNNNHIPIQSSNLLLNVNGVRAHQPQPIFPKQPTETTYGSQLPLSSDGIMGLADQRLSSNLMQGSALQGGRMGVVSLAAGAMPVATGSPANQLSSDGIGKSNGDTSSLSPVPYALNGVRGRRCNGTLDRVVERRQRRMIKNRESAARSRARKQAEIMEMHKNRVLDLVLSGSIIRTSIDRFRTNAKHALFDSYSSSTLLWRCCCCDDGRVNGNPESRIEEAYTIELEAEVAKLKEENQELRQKQAEIMEMHKNRALKVMDTQQGTKKRCLRRTQTAEVAKLKEENQELRQKQAEIMEMHKNRALKVMDTQQGTKKRCLRRTLTGVGFGSKWVDHKDFDRSLSNERKACVVRFIQLLHPPMALLLLRRRSSKWQS 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3178920 3183758 + Cp4.1LG07g05160.1 Cpe07g00488 472295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00488 463 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 100 249 - -
Cpe07g00488 463 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 308 364 IPR043452 GO:0003700|GO:0045893
Cpe07g00488 463 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 44 - -
Cpe07g00488 463 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 365 414 - -
Cpe07g00488 463 Coils Coil 308 342 - -
Cpe07g00488 463 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 308 364 - -
Cpe07g00488 463 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 46 81 - -
Cpe07g00488 463 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 225 240 IPR004827 GO:0003700|GO:0006355
Cpe07g00488 463 Gene3D - 220 260 - -
Cpe07g00488 463 Pfam bZIP transcription factor 222 248 IPR004827 GO:0003700|GO:0006355
Cpe07g00488 463 MobiDBLite consensus disorder prediction 1 26 - -
Cpe07g00488 463 SUPERFAMILY Leucine zipper domain 222 250 IPR046347 GO:0003700|GO:0006355
Cpe07g00488 463 SMART brlzneu 218 283 IPR004827 GO:0003700|GO:0006355
Cpe07g00488 463 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 7 44 IPR043452 GO:0003700|GO:0045893
Cpe07g00488 463 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 365 414 IPR043452 GO:0003700|GO:0045893
Cpe07g00488 463 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 100 249 IPR043452 GO:0003700|GO:0045893
Cpe07g00488 463 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 46 81 IPR043452 GO:0003700|GO:0045893
Cpe07g00488 463 Coils Coil 360 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00488 K14432 ABF; ABA responsive element binding factor - csv:101223043 290.041
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00488 Cpe11g00148 CCT
Cpe07g00488 Cpe11g00148 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00488 Cpe-Chr7:3178920 Cpe16g00807 Cpe-Chr16:7853892 2.68E-08 dispersed
Cpe11g00148 Cpe-Chr11:816688 Cpe07g00488 Cpe-Chr7:3178920 1.35E-14 wgd
Cpe15g00484 Cpe-Chr15:5830895 Cpe07g00488 Cpe-Chr7:3178920 2.31E-10 wgd
Cpe04g00286 Cpe-Chr4:3565748 Cpe07g00488 Cpe-Chr7:3178920 5.25E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g759 Blo01g01529 . . Bda03g00211 . . Bma04g00163 Bma01g02274 Cmo05g00179 Cmo12g00499 . . . Car12g00510 Sed10g2023 . Cpe07g00488 Bhi04g00358 Tan02g0922 Cmetu01g1641 . Hepe08g1288 . Lcy13g2085 Cla08g01575 . Cec08g1653 Cco08g1784 Clacu08g1760 . Cre08g1544 . . . . . . . Cme03g02053 . . . Bda01g01610 Bpe02g01800 . . . . . . . Cma05g00180 Car05g00153 . Cpe11g00148 . . . . . . . . . . . . . . . . Csa02g01943 Chy03g01549 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004657 2 1 2 3 1 0 2 1 1 1 1 1 0 1 1 2 1 3 2 1 1 2 1 1 1 0 1 6 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49749 PF00170 bZIP_1 4.20E-07 CL0018 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00488 Cpe_Chr07 FPKM 11.075472 10.419937 10.243336 9.596444 11.20708 9.192636 10.778005 14.562449 14.821535 15.400188