Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00492 ATGCAAGGGCAAAGGAGTAGTGTTGGTTCATTGTCGGAAACCATAAACTTTGAACATGGATCTTCGTCGAATAATCCTGGTAGCCAACCAGCTTACTGGAATAACATGTGGAATCCAGCAGAAAACCGAATACCGGATTATTTGTTGCCTACTACTGATATAAATACGGGATATGTAAGCTCTGTGAGCCATGAGCAACGGAATTTGAGTAGATGGAGCTTAGGTGAACCTAGCTCTTGTGATATGCAAACCGAGGCATTATCTGATGAACAAAAAGGTGAGGTTGGATGGTCTTCAGTGGCTCGTGATGCAGATGGTCCAGTTACAGAAACCCGACTCTGTGAGCCGTCAAATAATCCTTCACTGGGTCATGTGAATTTCAGCCCACTGATTATACAAAATTCCAATTCTAATGCACTACCTCATAGTCTAAATTTAAATGCAAGTTTTGCTAGTCATGGAGGTGAGAGTAGCCGAGTTAATGAAGGTTCTAACTTGTATAAATCTAGTGGATCGGAAGAAGGGCGGGCTCTATGTTCTAGTGCTTCGGATCCTCTTTTGCTTCCTTCTGGAAATAGTGGACTTCCAGTGGTTGCAAATGATGGTAGAGCAGGATCTTCCATGGATGGACGTCGAGCACCTTGTAAACGAAAAGCTATCGAGGGAAGTGTTACACAGCCCTCTTTAAGTGGAAGCAGTAACTATGCTCAGCATATTGAAAGTGGTGCTGAGCCCACTCTTCCAGTTTTTCCTGGTCGCTATAACACAGGAAGTAGGCTAACCATTCCTGCTCCACCAGCACGAATGAATCAAGCTCCGGTACGAGGTGCAGGTGAAATGACTTCCAACAGCTTCTCTGAGTCAATGGTTGCAGAAAGTTCAGATAGTTCTCAAAGAAACTATCGTATAAGGATTAGTTCATCCAATGCACAAGATTCTTTTGCACCGACTGGAATGACTGTTCGACATCCCGGGGCCTCATCTTCCCAGCTCCCAGCTAGAATTCTACCTGCTGAGCATGTATTAGACTTGAGGCCAGCACCAGCTCTAGACAATATATCTGCTCAAGGTCAGCCACTTATGATACATGTGCCTGCTTTACCTCGAAGTCTGCAACCATATAGATGGAATGGGAGCTCTACTTCAAGAAGTGGCGGTTCGTCGAGCTCTGCAGGGGAGAGACAGGTGGTGCAACGTGAGGAGGTGAGACCAAGCAACATGGGAAGAAACGTATCTGAACATCCCATGTTTGTCCCAGCAAACGAGCTGAGGAATTTGGTTCGTAATCCCTCAAGTAGAGGTTTAGCATCTTCAAACCTGTCCATTCCTGGAACTGTTGCTTCTACATCCAGGGTTGGTTCAAGTTCAGGCGTCCACCCTCCTTCTGGACCTTGGATGCCTCCTGAGAATAGTCCAACACAGTTTCCTCGAAGGTTAACAGAATATGTTCGTAGGCAGCTATTTTCTTCTGCTACAAACGAGTCCGGTGGTAGGACAAGTAATTATTCACAACGATCCGGTTCTACTTCTGCCCAGGATATGGTTCTTTCATCTGGATCTGGCCGTCGGGGGCACCATTTATTGCAACCAAGGTCCGCATTATGGATGGAAAGAAGAGGTGACACTGGGCTTGGTCTTCCCTATTCATTACGAACCTTGGCTACTTCCGGTGAAGGAAGCGACAATAATAGACTAGTATCTGAGCAGATTCGCAATGTCTTGGGCCTTGTCCGCCGCGGGGAAAGCTTACGAGTTGAGGATGTGATGATCCTGGACCAGTCACTATTTTTCGGGATGGCTGATATTTACGATCGGCACAGGGATATGCGCCTTGACGTTGACAACATGTCGTATGAGGAATTGTTGGCTTTGGAAGAGCGCATTGGAAACGTCAACACTGGACTAAGCGAAGAGACGATTGTTGCTCGACTGAAACGAACGAAGCACGTCAATGCCCCCGAACCACAGGTCGAGGAAGAACCATGTTGTGTTTGTCAGGAGGAATACAAAGAAGGGGAAGACATTGGAATGCTGGACTGCGGGCACAAGTTCCACACACAATGTATCAAGCAATGGCTGATGCAAAAGAATATATGTCCCATCTGCAAAACAACTGGTTTTGCAAGCCGAGAATGA 2136 46.4 MQGQRSSVGSLSETINFEHGSSSNNPGSQPAYWNNMWNPAENRIPDYLLPTTDINTGYVSSVSHEQRNLSRWSLGEPSSCDMQTEALSDEQKGEVGWSSVARDADGPVTETRLCEPSNNPSLGHVNFSPLIIQNSNSNALPHSLNLNASFASHGGESSRVNEGSNLYKSSGSEEGRALCSSASDPLLLPSGNSGLPVVANDGRAGSSMDGRRAPCKRKAIEGSVTQPSLSGSSNYAQHIESGAEPTLPVFPGRYNTGSRLTIPAPPARMNQAPVRGAGEMTSNSFSESMVAESSDSSQRNYRIRISSSNAQDSFAPTGMTVRHPGASSSQLPARILPAEHVLDLRPAPALDNISAQGQPLMIHVPALPRSLQPYRWNGSSTSRSGGSSSSAGERQVVQREEVRPSNMGRNVSEHPMFVPANELRNLVRNPSSRGLASSNLSIPGTVASTSRVGSSSGVHPPSGPWMPPENSPTQFPRRLTEYVRRQLFSSATNESGGRTSNYSQRSGSTSAQDMVLSSGSGRRGHHLLQPRSALWMERRGDTGLGLPYSLRTLATSGEGSDNNRLVSEQIRNVLGLVRRGESLRVEDVMILDQSLFFGMADIYDRHRDMRLDVDNMSYEELLALEERIGNVNTGLSEETIVARLKRTKHVNAPEPQVEEEPCCVCQEEYKEGEDIGMLDCGHKFHTQCIKQWLMQKNICPICKTTGFASRE 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3214700 3220305 - Cp4.1LG07g05100.1 Cpe07g00492 472299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00492 711 SUPERFAMILY RING/U-box 651 705 - -
Cpe07g00492 711 MobiDBLite consensus disorder prediction 1 30 - -
Cpe07g00492 711 Pfam Ring finger domain 662 703 IPR001841 -
Cpe07g00492 711 MobiDBLite consensus disorder prediction 190 214 - -
Cpe07g00492 711 SMART ring_2 662 702 IPR001841 -
Cpe07g00492 711 MobiDBLite consensus disorder prediction 489 532 - -
Cpe07g00492 711 MobiDBLite consensus disorder prediction 489 517 - -
Cpe07g00492 711 ProSiteProfiles Zinc finger RING-type profile. 662 703 IPR001841 -
Cpe07g00492 711 MobiDBLite consensus disorder prediction 242 300 - -
Cpe07g00492 711 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 707 IPR045191 GO:0061630
Cpe07g00492 711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 625 706 IPR013083 -
Cpe07g00492 711 CDD RING-H2_TTC3 661 703 - -
Cpe07g00492 711 MobiDBLite consensus disorder prediction 430 457 - -
Cpe07g00492 711 MobiDBLite consensus disorder prediction 276 300 - -
Cpe07g00492 711 MobiDBLite consensus disorder prediction 430 475 - -
Cpe07g00492 711 MobiDBLite consensus disorder prediction 152 172 - -
Cpe07g00492 711 MobiDBLite consensus disorder prediction 373 415 - -
Cpe07g00492 711 MobiDBLite consensus disorder prediction 373 395 - -
Cpe07g00492 711 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 707 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00492 - - - csv:101203243 1236.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00665 Cpe-Chr6:4139958 Cpe07g00492 Cpe-Chr7:3214700 9.42E-32 dispersed
Cpe07g00492 Cpe-Chr7:3214700 Cpe09g01128 Cpe-Chr9:9689616 3.08E-32 dispersed
Cpe11g00142 Cpe-Chr11:775512 Cpe07g00492 Cpe-Chr7:3214700 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g742 . . . . . . . . . Cmo12g00503 . . . Car12g00516 . . Cpe07g00492 Bhi04g00371 Tan02g1796 . . Hepe08g1297 . Lcy13g2093 . . . . . . . . . . . . . . Cme03g02064 Blo17g00874 . . Bda01g01607 Bpe02g01796 . Bma01g00659 . . . . Cma12g00560 . . . . . . . . . . . . . . . . . . . . . Chy03g01557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00492 Cpe_Chr07 FPKM 1.910735 1.652567 7.763216 7.083491 0.0 0.0 0.0 1.190673 1.65618 1.779665