Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00494 ATGGGATTAACCATGAAGCTTCATCACTTCTCCCCTTGTTCTTGGGATGAACCCTCTCTCTCCCTTGCTTGCACGAAGCGCTTACGTCCTCCTCCGCCCACCTCCGCCACATCAACGCTCACCGCTTTCGACCTCAAGACCTTCATCAAACCTGATACTAAGAAAGACCCGTCTTCCCCTCGGACAGGAGTTGTGGAAATGCAACCGGGAGGCACACGGTGGAACCCGACGCAAGAACAGATAGCGATATTGGAGATGCTTTATAGGAGAGGAATGAGGACTCCCAATGCTCAACAAATTGAACAAATTACTGCACAGCTTGGGAAGTACGGGAAGATTGAAGGAAAGAATGTGTTCTATTGGTTTCAGAATCATAAAGCTAGAGAACGACAGAAGCAGAAGCGCAATACTCTTGGTCTTGCTCACTCCTCCCCCATAACTCCTCCGACCACGACAACCATC 462 49.57 MGLTMKLHHFSPCSWDEPSLSLACTKRLRPPPPTSATSTLTAFDLKTFIKPDTKKDPSSPRTGVVEMQPGGTRWNPTQEQIAILEMLYRRGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNTLGLAHSSPITPPTTTTI 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3226239 3226774 - Cp4.1LG07g05080.1 Cpe07g00494 472301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00494 154 SUPERFAMILY Homeodomain-like 67 136 IPR009057 -
Cpe07g00494 154 CDD homeodomain 72 133 IPR001356 GO:0003677
Cpe07g00494 154 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 152 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Cpe07g00494 154 MobiDBLite consensus disorder prediction 49 74 - -
Cpe07g00494 154 MobiDBLite consensus disorder prediction 137 154 - -
Cpe07g00494 154 ProSiteProfiles 'Homeobox' domain profile. 67 132 IPR001356 GO:0003677
Cpe07g00494 154 Pfam Homeodomain 72 131 IPR001356 GO:0003677
Cpe07g00494 154 SMART HOX_1 69 136 IPR001356 GO:0003677
Cpe07g00494 154 Gene3D - 71 138 - -
Cpe07g00494 154 MobiDBLite consensus disorder prediction 130 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00494 - - - cpep:111798148 291.582
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00494 Cpe11g00141 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01371 Cpe-Chr4:11141487 Cpe07g00494 Cpe-Chr7:3226239 6.08E-31 dispersed
Cpe07g00494 Cpe-Chr7:3226239 Cpe20g00149 Cpe-Chr20:844047 3.01E-30 dispersed
Cpe02g01242 Cpe-Chr2:11163422 Cpe07g00494 Cpe-Chr7:3226239 1.35E-30 transposed
Cpe11g00141 Cpe-Chr11:767274 Cpe07g00494 Cpe-Chr7:3226239 1.38E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g735 . . . . . . . . Cmo05g00169 Cmo12g00505 . . . Car12g00518 Sed11g0934 . Cpe07g00494 Bhi04g00375 Tan02g1791 Cmetu12g0458 . Hepe08g1298 . Lcy13g2095 Cla08g01585 Cam08g2084 Cec08g1665 Cco08g1796 Clacu08g1770 . Cre08g1554 . . Cone17ag0854 Cone20ag0200 . . . Cme03g02065 . . . . . Bpe05g00030 Bma01g00657 Bma05g00042 . . . Cma12g00562 Cma05g00171 Car05g00145 . Cpe11g00141 . . . . . . . . . . . . . . . Lsi08g01489 Csa02g01931 Chy03g01558 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe09g01115 CCT,ECH 3 180 Wox Gene Family AT3G18010 56.9 8.0e-48 188.3
Cpe20g00149 CCT,CST,ECH 1 191 Wox Gene Family AT3G18010 55.4 4.4e-46 182.6
Cpe04g01371 CCT,CST,ECH 1 165 Wox Gene Family AT3G18010 53.8 2.1e-40 163.7
Cpe14g01056 . 1 274 Wox Gene Family AT4G35550 51.9 6.1e-72 268.1
Cpe06g00017 CCT 1 191 Wox Gene Family AT4G35550 61.0 2.7e-56 216.1
Cpe02g00030 CCT 238 399 Wox Gene Family AT4G35550 66.9 3.3e-54 209.1
Cpe02g00030 CCT 275 406 Wox Gene Family AT1G20700 58.5 6.7e-39 157.9
Cpe07g00494 CCT 5 138 Wox Gene Family AT1G46480 62.2 5.5e-43 171.4
Cpe19g01046 CCT 1 384 Wox Gene Family AT2G33880 50.7 3.4e-68 256.1
Cpe09g01115 CCT,ECH 3 180 Wox Gene Family AT3G18010 56.9 8.0e-48 188.3
Cpe20g00149 CCT,CST,ECH 1 191 Wox Gene Family AT3G18010 55.4 4.4e-46 182.6
Cpe04g01371 CCT,CST,ECH 1 165 Wox Gene Family AT3G18010 53.8 2.1e-40 163.7
Cpe07g00494 CCT 5 138 Wox Gene Family AT1G46480 62.2 5.5e-43 171.4
Cpe19g01046 CCT 1 384 Wox Gene Family AT2G33880 50.7 3.4e-68 256.1
Cpe14g01056 . 1 274 Wox Gene Family AT4G35550 51.9 6.1e-72 268.1
Cpe06g00017 CCT 1 191 Wox Gene Family AT4G35550 61.0 2.7e-56 216.1
Cpe02g00030 CCT 238 399 Wox Gene Family AT4G35550 66.9 3.3e-54 209.1
Cpe02g00030 CCT 275 406 Wox Gene Family AT1G20700 58.5 6.7e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49751 PF00046 Homeodomain 1.00E-19 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00494 Cpe_Chr07 FPKM 78.915733 63.990528 96.365036 93.022812 74.128204 87.007957 90.723503 100.914413 135.503189 154.602005