Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00500 ACACAAGGGGTCAAAATGGTTTTGTTGAAATTATCAATCTTGTTGTGTATGATATTATTTAGCCCTTCCCTTTCAGGGGCTACTTCTCCCACAAATATATTCATCCTTGCGGGTCAAAGCAACATGGCTGGTCGAGGTGGGGTAGAGAACAATACAAAGGGGAATCTTGTGTGGGATGGGAAGGTCCCATTAGATTGTCAATCCGACCCATCCATCCTAAGGTTGAACCCTGAGCGCCAGTGGGAGATAGCACATGAACCTCTCCATTTGGGGATTGACATCGGCAAAACTCCAGGGATTGGTCCAGGAATAGCATTTGCTCACCAGTTCATAGCAAAAGCTGGACAAAAGGCAGGCGTCGTGGGTTTAGTTCCTTGTGCTAGAGGTGGCACTTTAATTGAACAATGGAGTAAAAACCCTAGCAATACAAGTGCAACTTTTTACCAAAATTTCATTGAACGAATTAAAACATCGGAAAAAGAAGGTGGGGTTGTGCGGGCTTTGTTTTGGTACCAAGGAGAGAGCGATGCGGCTATGAGTGACACTGCTCATAGATACAAAGACAACTTAAAGAAGTTCATCACCGACATCCGCAATGATATAAAACCTAGATTTTTACCTGTCATTATTGTTAAGATATCCATGTATGACTTTTTTATGAAGCACGATACTCATGATTTGCCAGCAGTGAGAGCAGCTGAAGATGCAGTCCAAAAAGAGCTTCCAGACATCATTACTATCGACTCTTGGGAGTTGCCTATAAACTTTACCACATATGAAGGCTTTAGCTGGGATCACGGTCATTTTAATAGTGCAACTGAGATTGCTTTGGGTAAATGGTTGGCTGATACCTATCTCTCCCACTATGGGGCTACTTCTCCCACAAACATATTCATCCTTGCGGGTCAAAGCAACATAGCTGGTCGAGGTGGGGTAGAGAACAATACAGAGGGGAATCTTGTGTGGGATGGGAAGGTCCCATTAGATTGTCAATCCGACCCATCCATCCTAAGGTTGAACCCTGAGCGCCAGTGGGAGATAGCACACGAACCTCTCCATTTGGGGATTGACATCGGCAAAACTCCAGGGATTGGTCCAGGAATAGCATTTGCTCACCAGTTCATAGCAAAAGCTGGACAAAAGGCAGGCGTCGTGGGTTTAGTTCCTTGTGCTAGAGGTGGCACTTTAATTGAACAATGGAGTAAAAACCCTAGCAATACAAGTGCAACTTTTTACCAAAATTTCATTGAACGAATTAAAACATCGGAAAAAGAAGGTGGGGTTGTGCGGGCTTTGTTTTGGTACCAAGGAGAGAGCGATGCAGCTATGAGTGACACTGCTCATAGATACAAAGACAACTTAAAGAAGTTCATCACCGACATCCGCAATGATATAAAACCTAGATTTTTACCTGTCATTATTGTTAAGATATCCATGTATGACTTTTTTATGAAGCACGATACTCATGATTTGCCAGCAGTGAGAGCAGCTGAAGATGCAGTCCAAAAAGAGCTTCCAGACATCATTACTATCGACTCTTGGGAGTTGCCTATAAACTTTACCACCCCTTCCCTTTCGAGGGCTACTTCTCCCACAAACATATTCATCCTTGCCGGTCAAAGCAACATGGCTGGTCGAGGTGGGGTAGAAAACAATACAGAGGGGAATCTTGTGTGGGATGGGAAGGTCCCATTAGATTGTCAATCTGACCCATCCATCCTAAGGTTGAACCCGGAGCGCCAGTGGGAGATAGCACATGAACCTCTCCATTTGGGGATTGACATCGGCAAAACTCCAGGGATTGGTCCAGGAATAGCATTTGCTCACCAGTTCATAGCAAAAGCTGGACAAAAGGCAGGCGTCGTGGGTTTAGTTCCTTGTGCTAGAGGTGGCACTTTAATTGAACAATGGAGTAAAAACCCTAGCAATACAAGTGCAACTTTTTACCAAAATTTCATTGAACGAATTAAAACATCGGAAAAAGAAGGTGGGGTTGTGCGGGCTTTGTTTTGGTACCAAGGAGAGAGCGATGCGGCTATGAGTGACACTGCTCATAGATACAAAGACAACTTAAAGAAGTTCATCACCGACATCCGCAATGATATAAAACCTAGATTTTTACCTGTCATTATTGTTAAGATATCCATGTATGACTTTTTTATGAAGCACGATACTCATGATTTGCCAGCAGTGAGAGCAGCTGAAGATGCAGTCCAAAAAGAGCTTCCAGACATCATTACTATCGACTCTTGGGAGTTGCCTATAAACTTTACCACATATGAAGGCTTTAGCTGGGATCACGGTCATTTTAATAGTGCAACTGAGATTGCTTTGGGTAAATGGTTGGCTGATACCTATCTCTCCCACTATGGGGCTACTTCTCCCAAGAACATATTCATTCTCGCTGGTCAGAGCAATATGGCCGGTCGAGGTGGGGTTGAGAAAGATCACACAGGACAACTTGTGTGGGATGGGTATATCCCACCAGAGGCTCAATCTGACCCAACAATCTTACGATTTAGCCCTGAAGGTCAATGGGAGATAGCACTAGAACCTGTCCATGACGGGATCGATATCAACAAGACAGTTGGGGTTGGTTCAGCAATAGTATTTGCTCGCCAACTACAAGCGAAATCTAAGTCAAAGGCGGGCGTTGTGGGTTTAGTGCCTTGTGCTAGAGGTGGCACTTTGATTGAAGAGTGGATTAAAAATCCGAACAATCCTAAAGCAACCTTCTACCAAAATTTCATTGAACGAATCAAAGCATCAGAAAAAGATGGTGGGGTTGTACGTGCTCTTATCTGGTTGCAAGGTGAAAGTGATGCGGCTGCGAGTGACACTGCTCGTAGATATAAAGACAACTTAAAGAAATTCTTTATGGACATCCGCAATGACATAAAACCTAGATTTTTACCTATCATTCTTGTCAAAATAGCCGTCTATGACACATATATGAAGCACGATACTCATGATTTACCAGCCGTAAGAGCGGCAGAAGATGCCGTCCAAAAGGAGCTACCAGACATAGTGACCATTGACTCCTTAAATTTGGTAAACACGGTCACACATGAAGGGTTTAACCAAGATCATGGTCATTTTAATACCAAGACTCAAATTGCTTTA 3123 43.55 TQGVKMVLLKLSILLCMILFSPSLSGATSPTNIFILAGQSNMAGRGGVENNTKGNLVWDGKVPLDCQSDPSILRLNPERQWEIAHEPLHLGIDIGKTPGIGPGIAFAHQFIAKAGQKAGVVGLVPCARGGTLIEQWSKNPSNTSATFYQNFIERIKTSEKEGGVVRALFWYQGESDAAMSDTAHRYKDNLKKFITDIRNDIKPRFLPVIIVKISMYDFFMKHDTHDLPAVRAAEDAVQKELPDIITIDSWELPINFTTYEGFSWDHGHFNSATEIALGKWLADTYLSHYGATSPTNIFILAGQSNIAGRGGVENNTEGNLVWDGKVPLDCQSDPSILRLNPERQWEIAHEPLHLGIDIGKTPGIGPGIAFAHQFIAKAGQKAGVVGLVPCARGGTLIEQWSKNPSNTSATFYQNFIERIKTSEKEGGVVRALFWYQGESDAAMSDTAHRYKDNLKKFITDIRNDIKPRFLPVIIVKISMYDFFMKHDTHDLPAVRAAEDAVQKELPDIITIDSWELPINFTTPSLSRATSPTNIFILAGQSNMAGRGGVENNTEGNLVWDGKVPLDCQSDPSILRLNPERQWEIAHEPLHLGIDIGKTPGIGPGIAFAHQFIAKAGQKAGVVGLVPCARGGTLIEQWSKNPSNTSATFYQNFIERIKTSEKEGGVVRALFWYQGESDAAMSDTAHRYKDNLKKFITDIRNDIKPRFLPVIIVKISMYDFFMKHDTHDLPAVRAAEDAVQKELPDIITIDSWELPINFTTYEGFSWDHGHFNSATEIALGKWLADTYLSHYGATSPKNIFILAGQSNMAGRGGVEKDHTGQLVWDGYIPPEAQSDPTILRFSPEGQWEIALEPVHDGIDINKTVGVGSAIVFARQLQAKSKSKAGVVGLVPCARGGTLIEEWIKNPNNPKATFYQNFIERIKASEKDGGVVRALIWLQGESDAAASDTARRYKDNLKKFFMDIRNDIKPRFLPIILVKIAVYDTYMKHDTHDLPAVRAAEDAVQKELPDIVTIDSLNLVNTVTHEGFNQDHGHFNTKTQIAL 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3268257 3282492 + Cp4.1LG07g05170.1 Cpe07g00500 472307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00500 1041 SUPERFAMILY SGNH hydrolase 797 1038 - -
Cpe07g00500 1041 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 292 520 - -
Cpe07g00500 1041 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 28 289 - -
Cpe07g00500 1041 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 528 790 - -
Cpe07g00500 1041 SUPERFAMILY SGNH hydrolase 533 793 - -
Cpe07g00500 1041 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 793 1041 - -
Cpe07g00500 1041 PANTHER BNACNNG62850D PROTEIN 793 1041 - -
Cpe07g00500 1041 SUPERFAMILY SGNH hydrolase 296 518 - -
Cpe07g00500 1041 Gene3D SGNH hydrolase 293 528 IPR036514 -
Cpe07g00500 1041 Gene3D SGNH hydrolase 29 290 IPR036514 -
Cpe07g00500 1041 Gene3D SGNH hydrolase 794 1041 IPR036514 -
Cpe07g00500 1041 Gene3D SGNH hydrolase 530 791 IPR036514 -
Cpe07g00500 1041 SUPERFAMILY SGNH hydrolase 32 292 - -
Cpe07g00500 1041 PANTHER BNACNNG62850D PROTEIN 28 289 - -
Cpe07g00500 1041 PANTHER BNACNNG62850D PROTEIN 528 790 - -
Cpe07g00500 1041 PANTHER BNACNNG62850D PROTEIN 292 520 - -
Cpe07g00500 1041 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 532 787 IPR005181 -
Cpe07g00500 1041 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 295 519 IPR005181 -
Cpe07g00500 1041 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 31 286 IPR005181 -
Cpe07g00500 1041 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 796 1041 IPR005181 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00500 - - - cmax:111471873 526.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00487 Cpe-Chr7:3174709 Cpe07g00500 Cpe-Chr7:3268257 3.86E-129 dispersed
Cpe07g00500 Cpe-Chr7:3268257 Cpe07g00634 Cpe-Chr7:4467477 2.05E-168 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g715 . Blo12g00972 . Bda03g00197 . Bpe04g00169 Bma04g00150 . . Cmo12g00515 . . . . . . Cpe07g00500 Bhi04g00386 . . . Hepe03g0729 . Lcy13g2109 Cla08g01593 Cam08g2093 Cec08g1674 Cco08g1805 Clacu08g1778 . Cre08g1561 . . . Cone20ag0211 . Csa04g02447 . Cme03g02074 . . . . . Bpe05g00378 . . . . . Cma12g00572 . . . . . . . . . . . . . . . . . . . Lsi08g01499 Csa02g01923 Chy07g00162 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000128 0 5 0 0 0 8 1 8 7 3 6 7 11 6 8 12 7 1 11 7 5 24 17 10 14 13 7 4 12 0 214
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00500 Cpe_Chr07 FPKM 5.850242 7.882086 4.272707 3.494117 4.964612 3.520518 4.377105 3.947067 3.195455 3.334434