Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00506 ATAGACATGGCTACTACTCCTCAAATTGCTCACTTCATTAAGGCTGTAGCTTTCTTCAACTGCATACTTCTCGGTGTCAGTTTTAAACAAGGTGGGTTTCCATTCAACTTCACCGCAATGCCTGCCCTTGAGAGTCTTGACTTGACATCAAATCAAATCACAGATCGACTTCCTAAAGAGATGGGTGTTTTAACCAAGCTTCAAGTCTTGAACTTGGCACGAAACCAACTCTACGGCACAATCCCCGCAGCCTTTGGGAACATTTCCTCGCTCGTTACTCTAGACTTAGGGACCAATTTTCTGAATGGATCGATACCAAGCCAAGTGGGTGAGCTTCACAATCTCAAGCATCTTGTGCTTCGTCTCAATCATCTCTCTGGCCTAGTTCCACCCAACGTGTTCAACAAGTCCTCATTACTCACCCTTGTCTTGGCTTCCAACAGATTTGAGGGAACATTTCCACCTGACATTGGAGACAATCTCTCCAATCTTTTAGTCTTCCACTTTTGCTTCAATCAGTTTACTGGAACAATCCCTCATTCAATCCACAACATGACCAAAATTCAAATCCTACGCTTTGCTCATAACTATTTTCATGGAATGCTGCCACCAGGTTTGGAAAATCTCCCTCAACTTTCATATTACAATGTTGGGTCGAATAAGATTGTCAGCGTCGGTGATGATGGACTTAGTTTTATACGTTCTTTGATGAACAACTCGCATCTCGATTACTTGGCAATCGACGATAATCAGTTGGAGGGTCTAATTCCAGAAACTATTGGAAATCTTTCGAAGGATCTTTCAGTGTTGAACATGGGTGGGAATCGTATGTATGGCAACATACCTCCCTCAATATCTAATTTGCGTGGCTTGTCTCTGCTAAATTTGAGCGATAACTTGTTATCAGGTGAAATCCCACCTCAAATAGGCAAGTTGGGAATGCTACAAATGCTTGGTTTGGCTAGGAATCGATTCTCTGGTAACATCCCAACCTCACTAGGAAATCTTCAAAGATTGATTGAATTTGATTTGTCAGGAAACAGTTTAATTGGAGAAATACCAGCTTCTTTTGGGAACTTTGTGAACCTATTCTCGTTGGACTTGTCCAACAATATGCTGGAAGGAAGTGTACCAAAAGAGGCACTCACTTTGCCTCATTTAAGCAAGCTTTTAAACCTATCCAATAACCTTTTTAGTGGGTCTCTGCCGAAAGAGATTGGGTTGCTACAAAATGTTGTTGCCATCGATATCTCTAATAACCATATCTCTGGTAATATTGTTTCTTCAGTCAGTGGTTGCAAAAGCTTAGAGGTACTGATAATGGCCAGAAATGAATTCTCAGGCTCCATTCCAAGAGCTTTACAAGATCTTAGAGGCTTACGACGTCTCGATCTATCCTCAAACCATCTTTCAGGCTCCATTCCTAGTGAGCTTCAGAATATAGCAGGGCTTCAGTTTTTGAATCTCTCTTTTAATGATCTGGAAGGAGCAATCCCTATAGGTGGAGTATTTGAAAAAATCAACAACATTTATTTAGAAGGTAATCCAAAGCTTTGCTTGTATTCTTCATGTCCAGAAAGTGGATCTAAGAGTGCAAAACTAACTAAAGTTATAGTCTACACGGTTGTATTTTCAACATTAGCACTCTTTTTTGTGATTGGTATGGTCATCTGTTTGAAGAAGAAGAAATCGATGGTTGTACCATCGACCGAGTTGCTGAGGAGGCAATATGAAATGGTTACTTATGATGAGCTGCGTTCAGCTACAAGAAATTTCAATGAGAAGAATTTGATTGGAAAAGGAAGCTTTGGTTCAGTATACAAAGGAAATTTAAAGCAAGGAGTTCCTGTGGCTATCAAGGTTCTTGACATGAACAGGGCTGGTTCTATAACTAGTTTTTTGGCAGAGTGTGAAGCCTTGCGGAACGTGAGACATCGAAATCTTGTTAAACTCATCACAGCATGCTCCAGCATAGACTTCTCAAACATGGAATTTCGAGCTTTGATTTATGAACTTTTGAGCCATGGAAGTTTGGACGAATGGATTCAAGGCCAAAGAAGCCATGAAAAGTATGGCTATGGAGTAAAGGCAACAAAAGCAGGAGATGTGTACAGTTTTGGAGTAACATTGTTAGAACTTTTTACAGGGAAGACTCCAACAGATGAATATTTCACAGGAGAACTGAATTTGGTAAAGTGGGTAGAATCGTGTTTCCCGAACGATTTGTTGGAAGTGATAGATTTCAAATTGTCAAGGCTTTGTGTGGATTTGAAACACGAAAATCAAATCATAAATTCTGATAAGCAGAAGGGTTGTTTGATCCAAACAATTGAAGTTGCGCTCTCATGTACAGTGAATTCTCCGACAAACCGCATTGACATCAAAGATGCTCTATCAAAGCTTAAAAATGCCAAAGACAACCTAATTTGTTCTACTAAGAAAAGCGTTTCATGCAGCGAAGATTACTCAGTTCATGATTTAGAATATTGA 2490 39.96 IDMATTPQIAHFIKAVAFFNCILLGVSFKQGGFPFNFTAMPALESLDLTSNQITDRLPKEMGVLTKLQVLNLARNQLYGTIPAAFGNISSLVTLDLGTNFLNGSIPSQVGELHNLKHLVLRLNHLSGLVPPNVFNKSSLLTLVLASNRFEGTFPPDIGDNLSNLLVFHFCFNQFTGTIPHSIHNMTKIQILRFAHNYFHGMLPPGLENLPQLSYYNVGSNKIVSVGDDGLSFIRSLMNNSHLDYLAIDDNQLEGLIPETIGNLSKDLSVLNMGGNRMYGNIPPSISNLRGLSLLNLSDNLLSGEIPPQIGKLGMLQMLGLARNRFSGNIPTSLGNLQRLIEFDLSGNSLIGEIPASFGNFVNLFSLDLSNNMLEGSVPKEALTLPHLSKLLNLSNNLFSGSLPKEIGLLQNVVAIDISNNHISGNIVSSVSGCKSLEVLIMARNEFSGSIPRALQDLRGLRRLDLSSNHLSGSIPSELQNIAGLQFLNLSFNDLEGAIPIGGVFEKINNIYLEGNPKLCLYSSCPESGSKSAKLTKVIVYTVVFSTLALFFVIGMVICLKKKKSMVVPSTELLRRQYEMVTYDELRSATRNFNEKNLIGKGSFGSVYKGNLKQGVPVAIKVLDMNRAGSITSFLAECEALRNVRHRNLVKLITACSSIDFSNMEFRALIYELLSHGSLDEWIQGQRSHEKYGYGVKATKAGDVYSFGVTLLELFTGKTPTDEYFTGELNLVKWVESCFPNDLLEVIDFKLSRLCVDLKHENQIINSDKQKGCLIQTIEVALSCTVNSPTNRIDIKDALSKLKNAKDNLICSTKKSVSCSEDYSVHDLEY 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3323608 3326734 - Cp4.1LG07g04960.1 Cpe07g00506 472313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00506 829 SUPERFAMILY Protein kinase-like (PK-like) 573 801 IPR011009 -
Cpe07g00506 829 Gene3D Ribonuclease Inhibitor 128 229 IPR032675 -
Cpe07g00506 829 Pfam Leucine rich repeat 411 470 IPR001611 GO:0005515
Cpe07g00506 829 Pfam Leucine rich repeat 315 373 IPR001611 GO:0005515
Cpe07g00506 829 Gene3D Transferase(Phosphotransferase) domain 1 672 817 - -
Cpe07g00506 829 Gene3D Ribonuclease Inhibitor 20 127 IPR032675 -
Cpe07g00506 829 PANTHER OS04G0122200 PROTEIN 17 685 - -
Cpe07g00506 829 SMART serkin_6 592 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe07g00506 829 SUPERFAMILY L domain-like 33 156 - -
Cpe07g00506 829 PANTHER OS04G0122200 PROTEIN 690 807 - -
Cpe07g00506 829 SMART LRR_typ_2 384 409 IPR003591 -
Cpe07g00506 829 SMART LRR_typ_2 457 480 IPR003591 -
Cpe07g00506 829 SMART LRR_typ_2 336 359 IPR003591 -
Cpe07g00506 829 SMART LRR_typ_2 64 87 IPR003591 -
Cpe07g00506 829 SMART LRR_typ_2 288 312 IPR003591 -
Cpe07g00506 829 SMART LRR_typ_2 40 62 IPR003591 -
Cpe07g00506 829 SMART LRR_typ_2 112 136 IPR003591 -
Cpe07g00506 829 Gene3D Phosphorylase Kinase; domain 1 572 671 - -
Cpe07g00506 829 SUPERFAMILY RNI-like 142 499 - -
Cpe07g00506 829 ProSitePatterns Protein kinases ATP-binding region signature. 598 620 IPR017441 GO:0005524
Cpe07g00506 829 Gene3D Ribonuclease Inhibitor 230 527 IPR032675 -
Cpe07g00506 829 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 690 807 - -
Cpe07g00506 829 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 17 685 - -
Cpe07g00506 829 Pfam Protein tyrosine and serine/threonine kinase 595 685 IPR001245 GO:0004672|GO:0006468
Cpe07g00506 829 ProSiteProfiles Protein kinase domain profile. 592 829 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00506 - - - cpep:111798619 1223.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00504 Cpe-Chr7:3303845 Cpe07g00506 Cpe-Chr7:3323608 4.45E-23 dispersed
Cpe07g00506 Cpe-Chr7:3323608 Cpe11g00132 Cpe-Chr11:720957 2.24E-26 dispersed
Cpe07g00505 Cpe-Chr7:3319669 Cpe07g00506 Cpe-Chr7:3323608 6.60E-28 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g25 . . . . . . . . . . . . . . . Cpe07g00506 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00230 . . . . . . . . . . . . . . . . . . . . . .
Vvi18g690 . . . . . . . . . . . . . . . . Cpe07g00506 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00578 . Car05g00136 . . . . . . . . . . . . . . . . . Lsi08g01506 Csa02g01915 Chy03g01570 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000052 15 13 4 11 4 8 7 7 11 17 9 10 8 7 14 8 11 4 7 11 14 16 4 8 4 14 8 18 7 5 284
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62507 PF07714 PK_Tyr_Ser-Thr 8.60E-13 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe07g00506 Cpe_Chr07 FPKM 0.188496 0.104 0.005944 0.066081 0.0 0.078397 0.120939 0.098972 0.125326 0.17674